Mercurial > repos > imgteam > coordinates_of_roi
comparison coordinates_of_roi.xml @ 4:00175f4a2bbb draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/coordinates_of_roi/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
author | imgteam |
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date | Mon, 13 Nov 2023 22:10:52 +0000 |
parents | 02a686fc1654 |
children |
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3:02a686fc1654 | 4:00175f4a2bbb |
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1 <tool id="ip_coordinates_of_roi" name="Coordinates of ROI" version="0.0.4"> | 1 <tool id="ip_coordinates_of_roi" name="Convert binary image to points (point coordinates)" version="0.0.4-2"> |
2 <description></description> | 2 <description></description> |
3 <edam_operations> | |
4 <edam_operation>operation_3443</edam_operation> | |
5 </edam_operations> | |
6 <xrefs> | |
7 <xref type="bio.tools">galaxy_image_analysis</xref> | |
8 </xrefs> | |
3 <requirements> | 9 <requirements> |
4 <requirement type="package" version="0.14.2">scikit-image</requirement> | 10 <requirement type="package" version="0.14.2">scikit-image</requirement> |
5 <requirement type="package" version="0.23.4">pandas</requirement> | 11 <requirement type="package" version="0.23.4">pandas</requirement> |
12 <requirement type="package" version="0.15.1">tifffile</requirement> | |
6 </requirements> | 13 </requirements> |
7 <command detect_errors="aggressive"> | 14 <command detect_errors="aggressive"> |
8 <![CDATA[ | 15 <![CDATA[ |
9 python '$__tool_directory__/coordinates_of_roi.py' | 16 python '$__tool_directory__/coordinates_of_roi.py' |
10 '$im' | 17 '$im' |
11 '$pixel_table' | 18 '$pixel_table' |
12 $white_obj | 19 $white_obj |
13 --threshold $threshold | 20 --threshold $threshold |
14 ]]> | 21 ]]> |
15 </command> | 22 </command> |
16 <inputs> | 23 <inputs> |