Mercurial > repos > imgteam > coordinates_of_roi
diff coordinates_of_roi.xml @ 4:00175f4a2bbb draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/coordinates_of_roi/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
author | imgteam |
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date | Mon, 13 Nov 2023 22:10:52 +0000 |
parents | 02a686fc1654 |
children |
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--- a/coordinates_of_roi.xml Mon Mar 25 11:15:39 2019 -0400 +++ b/coordinates_of_roi.xml Mon Nov 13 22:10:52 2023 +0000 @@ -1,14 +1,21 @@ -<tool id="ip_coordinates_of_roi" name="Coordinates of ROI" version="0.0.4"> +<tool id="ip_coordinates_of_roi" name="Convert binary image to points (point coordinates)" version="0.0.4-2"> <description></description> + <edam_operations> + <edam_operation>operation_3443</edam_operation> + </edam_operations> + <xrefs> + <xref type="bio.tools">galaxy_image_analysis</xref> + </xrefs> <requirements> <requirement type="package" version="0.14.2">scikit-image</requirement> <requirement type="package" version="0.23.4">pandas</requirement> + <requirement type="package" version="0.15.1">tifffile</requirement> </requirements> <command detect_errors="aggressive"> <![CDATA[ python '$__tool_directory__/coordinates_of_roi.py' '$im' - '$pixel_table' + '$pixel_table' $white_obj --threshold $threshold ]]>