Mercurial > repos > imgteam > coordinates_of_roi

comparison coordinates_of_roi.xml @ 3:02a686fc1654 draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/coordinates_of_roi/ commit da043bdec956714abb0fa82f278931bbe1a6d41d
author imgteam
date Mon, 25 Mar 2019 11:15:39 -0400
parents 24d9bd16c953
children 00175f4a2bbb
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2:24d9bd16c953 3:02a686fc1654
7 <command detect_errors="aggressive"> 7 <command detect_errors="aggressive">
8 <![CDATA[ 8 <![CDATA[
9 python '$__tool_directory__/coordinates_of_roi.py' 9 python '$__tool_directory__/coordinates_of_roi.py'
10 '$im' 10 '$im'
11 '$pixel_table' 11 '$pixel_table'
12 $offset_x $offset_y
13 $white_obj 12 $white_obj
14 --threshold $threshold 13 --threshold $threshold
15 ]]> 14 ]]>
16 </command> 15 </command>
17 <inputs> 16 <inputs>
18 <param name="im" type="data" format="png" label="Source file" /> 17 <param name="im" type="data" format="png" label="Source file" />
19 <param name="white_obj" type="boolean" truevalue="--white_obj" falsevalue="" checked="false" 18 <param name="white_obj" type="boolean" truevalue="--white_obj" falsevalue="" checked="false"
20 label="Set to Yes if object is white and background black, otherwise set to No" /> 19 label="Set to Yes if object is white and background black, otherwise set to No" />
21 <param name="threshold" type="float" value="0.5" label="Threshold value" /> 20 <param name="threshold" type="float" value="0.5" label="Threshold value" />
22 <param name="offset_x" type="integer" value="0" label="Added offset in x direction (=width direction)" />
23 <param name="offset_y" type="integer" value="0" label="Added offset in y direction (=height direction)" />
24 </inputs> 21 </inputs>
25 <outputs> 22 <outputs>
26 <data format="tabular" name="pixel_table" /> 23 <data format="tabular" name="pixel_table" />
27 </outputs> 24 </outputs>
28 <tests> 25 <tests>
29 <test> 26 <test>
30 <param name="im" value="test.png"/> 27 <param name="im" value="test.png"/>
31 <param name="white_obj" value="true"/> 28 <param name="white_obj" value="true"/>
32 <output name="pixel_table" value="newtable.tsv" ftype="tabular"/> 29 <output name="pixel_table" value="newtable.tsv" ftype="tabular"/>
33 </test>
34 <test>
35 <param name="im" value="test.png"/>
36 <param name="white_obj" value="true"/>
37 <param name="offset_x" value="1"/>
38 <param name="offset_y" value="2"/>
39 <output name="pixel_table" value="newtable2.tsv" ftype="tabular"/>
40 </test> 30 </test>
41 </tests> 31 </tests>
42 <help> 32 <help>
43 **What it does** 33 **What it does**
44 34