Mercurial > repos > imgteam > count_objects

diff count_objects.py @ 2:5bf8eb50b280 draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit 3c2a4fed433e518fcd0bc8d4deffcc5c2346b2b5
author imgteam
date Sat, 08 Jul 2023 01:32:11 +0000
parents 664232d2a3f7
children
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line diff
--- a/count_objects.py	Wed Dec 18 05:01:56 2019 -0500
+++ b/count_objects.py	Sat Jul 08 01:32:11 2023 +0000
@@ -1,17 +1,16 @@
 #!/usr/bin/python
 
 import argparse
-import numpy as np
-import os
+
 import skimage.io
-from skimage.measure import regionprops 
+from skimage.measure import regionprops
 
 parser = argparse.ArgumentParser(description='Count Objects')
 parser.add_argument('input_file', type=argparse.FileType('r'),
                     help='Label input file')
 parser.add_argument('output_file', type=argparse.FileType('w'),
                     help='Tabular output file')
-args = parser.parse_args() 
+args = parser.parse_args()
 
 img_raw = skimage.io.imread(args.input_file.name)
 res = len(regionprops(img_raw))