Mercurial > repos > imgteam > count_objects
view count_objects.py @ 3:b58447a2eed2 draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/count_objects/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
author | imgteam |
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date | Mon, 13 Nov 2023 22:10:56 +0000 |
parents | 5bf8eb50b280 |
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#!/usr/bin/python import argparse import skimage.io from skimage.measure import regionprops parser = argparse.ArgumentParser(description='Count Objects') parser.add_argument('input_file', type=argparse.FileType('r'), help='Label input file') parser.add_argument('output_file', type=argparse.FileType('w'), help='Tabular output file') args = parser.parse_args() img_raw = skimage.io.imread(args.input_file.name) res = len(regionprops(img_raw)) text_file = open(args.output_file.name, "w") text_file.write("objects\n%s" % res) text_file.close()