Mercurial > repos > imgteam > count_objects

diff count_objects.py @ 1:664232d2a3f7 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit 3d389fdec0db29cf6fbd783c0501455bf624fa90"
author imgteam
date Wed, 18 Dec 2019 05:01:56 -0500
parents 895a29ebd0c7
children 5bf8eb50b280
line wrap: on
line diff
--- a/count_objects.py	Sat Feb 09 14:34:18 2019 -0500
+++ b/count_objects.py	Wed Dec 18 05:01:56 2019 -0500
@@ -4,14 +4,14 @@
 import numpy as np
 import os
 import skimage.io
-from skimage.measure import regionprops
+from skimage.measure import regionprops 
 
 parser = argparse.ArgumentParser(description='Count Objects')
 parser.add_argument('input_file', type=argparse.FileType('r'),
                     help='Label input file')
 parser.add_argument('output_file', type=argparse.FileType('w'),
                     help='Tabular output file')
-args = parser.parse_args()
+args = parser.parse_args() 
 
 img_raw = skimage.io.imread(args.input_file.name)
 res = len(regionprops(img_raw))