Mercurial > repos > imgteam > image_registration_affine

comparison image_registration_affine.xml @ 0:e34222a620d4 draft

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"planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/image_registration_affine/ commit 79c2fd560fce8ded4d7f7fe97e876871794e2f9d"
author imgteam
date Wed, 30 Dec 2020 20:24:35 +0000
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children fa769715b6b0
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1 <tool id="ip_image_registration" name="Image Registration" version="0.0.1">
2 <description>based on intensity information</description>
3 <requirements>
4 <requirement type="package" version="0.14.2">scikit-image</requirement>
5 <requirement type="package" version="1.1.0">scipy</requirement>
6 <requirement type="package" version="0.23.4">pandas</requirement>
7 <requirement type="package" version="1.15.2">numpy</requirement>
8 <requirement type="package" version="0.15.1">tifffile</requirement>
9 </requirements>
10 <command>
11 <![CDATA[
12 python '$__tool_directory__/image_registration_affine.py'
13 '$fn_moving'
14 '$fn_fixed'
15 '$fn_tmat'
16 ]]>
17 </command>
18 <inputs>
19 <param name="fn_moving" type="data" format="png" label="Moving Image" />
20 <param name="fn_fixed" type="data" format="png" label="Fixed Image" />
21 </inputs>
22 <outputs>
23 <data format="tabular" name="fn_tmat" />
24 </outputs>
25 <tests>
26 <test>
27 <param name="fn_moving" value="moving.png"/>
28 <param name="fn_fixed" value="fixed.png"/>
29 <output name="fn_tmat" value="tmat.tsv" ftype="tabular" compare="diff" lines_diff="6"/>
30 </test>
31 </tests>
32 <help>
33 **What it does**
34
35 This tool estimates the (affine) transformation matrix for registration of two images based on intensity information.
36 </help>
37 </tool>