Mercurial > repos > imgteam > image_registration_affine
diff image_registration_affine.xml @ 0:e34222a620d4 draft
"planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/image_registration_affine/ commit 79c2fd560fce8ded4d7f7fe97e876871794e2f9d"
author | imgteam |
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date | Wed, 30 Dec 2020 20:24:35 +0000 |
parents | |
children | fa769715b6b0 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/image_registration_affine.xml Wed Dec 30 20:24:35 2020 +0000 @@ -0,0 +1,37 @@ +<tool id="ip_image_registration" name="Image Registration" version="0.0.1"> + <description>based on intensity information</description> + <requirements> + <requirement type="package" version="0.14.2">scikit-image</requirement> + <requirement type="package" version="1.1.0">scipy</requirement> + <requirement type="package" version="0.23.4">pandas</requirement> + <requirement type="package" version="1.15.2">numpy</requirement> + <requirement type="package" version="0.15.1">tifffile</requirement> + </requirements> + <command> + <![CDATA[ + python '$__tool_directory__/image_registration_affine.py' + '$fn_moving' + '$fn_fixed' + '$fn_tmat' + ]]> + </command> + <inputs> + <param name="fn_moving" type="data" format="png" label="Moving Image" /> + <param name="fn_fixed" type="data" format="png" label="Fixed Image" /> + </inputs> + <outputs> + <data format="tabular" name="fn_tmat" /> + </outputs> + <tests> + <test> + <param name="fn_moving" value="moving.png"/> + <param name="fn_fixed" value="fixed.png"/> + <output name="fn_tmat" value="tmat.tsv" ftype="tabular" compare="diff" lines_diff="6"/> + </test> + </tests> + <help> + **What it does** + + This tool estimates the (affine) transformation matrix for registration of two images based on intensity information. + </help> +</tool>