Mercurial > repos > imgteam > imagej2_find_maxima
comparison imagej2_create_image_jython_script.py @ 0:29b39f5b0e69 draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit b08f0e6d1546caaf627b21f8c94044285d5d5b9c-dirty"
| author | imgteam |
|---|---|
| date | Tue, 17 Sep 2019 17:01:44 -0400 |
| parents | |
| children | e2622ebb5ce4 |
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| -1:000000000000 | 0:29b39f5b0e69 |
|---|---|
| 1 import sys | |
| 2 from ij import IJ | |
| 3 | |
| 4 # Fiji Jython interpreter implements Python 2.5 which does not | |
| 5 # provide support for argparse. | |
| 6 title = sys.argv[ -6 ] | |
| 7 width = int( sys.argv[ -5 ] ) | |
| 8 height = int( sys.argv[ -4 ] ) | |
| 9 depth = int( sys.argv[ -3 ] ) | |
| 10 type = sys.argv[ -2 ].replace( '_', ' ' ) | |
| 11 tmp_image_path = sys.argv[ -1 ] | |
| 12 | |
| 13 imp = IJ.newImage( title, type, width, height, depth ) | |
| 14 IJ.save( imp, "%s" % tmp_image_path ) |