Mercurial > repos > imgteam > iscc_sum

annotate iscc_sum.xml @ 0:b9caa783059f draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
author imgteam
date Thu, 06 Nov 2025 10:22:47 +0000
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b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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1 <tool id="iscc_sum" name="Generate ISCC hash" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="24.1">
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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2 <description>with ISCC-SUM</description>
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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3
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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4 <macros>
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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5 <import>macros.xml</import>
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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6 <import>creators.xml</import>
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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7 </macros>
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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8 <expand macro="requirements" />
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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9 <expand macro="version_command" />
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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10 <creator>
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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11 <expand macro="creators/iscc" />
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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12 <expand macro="creators/lco" />
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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13 <expand macro="creators/maartenpaul" />
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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14 <expand macro="creators/etzm" />
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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15 </creator>
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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17 <command detect_errors="exit_code"><![CDATA[
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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18 iscc-sum '$input_file' | cut -d':' -f2 | cut -d' ' -f1 > '${output_file}'
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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19 ]]></command>
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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21 <inputs>
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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22 <param name="input_file" type="data" format="data" label="Input File"
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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23 help="Any file type - ISCC-SUM will generate a checksum and similarity hash"/>
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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24 </inputs>
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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26 <outputs>
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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27 <data name="output_file" format="txt" label="${tool.name} on ${on_string}"/>
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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28 </outputs>
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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29
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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30 <tests>
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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31 <test expect_num_outputs="1">
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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32 <param name="input_file" value="test1.png"/>
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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33 <output name="output_file">
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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34 <assert_contents>
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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35 <has_line line="K4AOMGOGQJA4Y46PAC4YPPA63GKD5RVFPR7FU3I4OOEW44TYXNYOTMY" />
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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36 </assert_contents>
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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37 </output>
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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38 </test>
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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39 <test expect_num_outputs="1">
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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40 <param name="input_file" value="test2.tiff"/>
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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41 <output name="output_file">
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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42 <assert_contents>
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43 <has_line line="K4AGSPOSB5SS2X427WZ27QASTSBVTS55DXLMFDF7WOJKEOSTDEI3OXQ" />
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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44 </assert_contents>
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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45 </output>
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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46 </test>
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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47 <test expect_num_outputs="1">
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48 <param name="input_file" value="test3.fasta"/>
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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49 <output name="output_file">
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50 <assert_contents>
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51 <has_line line="K4AKF7PTZ7JTAAYZ7YZHZPR5RETKYXXE7RTBTJA4JX5GQQMSLZRC6QQ" />
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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52 </assert_contents>
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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53 </output>
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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54 </test>
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55 </tests>
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56
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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57 <help><![CDATA[
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58 **What it does**
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59
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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60 Generates an International Standard Content Code (ISCC) based checksum and similarity hash from any input file.
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61
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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62 The ISCC-SUM is a content-derived identifier that:
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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63 - Creates a unique checksum based on file content
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64 - Generates a similarity hash for content comparison
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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65 - Works with any file format
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66
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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67 **Input**
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68
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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69 Any file format is accepted as input.
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70
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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71 **Output**
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72
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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73 A text file containing the ISCC-SUM code for the input file.
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74
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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75 **More Information**
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76
b9caa783059f planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/iscc-sum commit e2d8293c17c87553b267747c6a7b10b9b3ddd0d2
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77 For more details about ISCC, visit: https://iscc.codes/
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78 ]]></help>
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79
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80 <expand macro="citations" />
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81
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82 </tool>