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comparison orientationpy.xml @ 1:df211f6b5cf2 draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/orientationpy commit c045f067a57e8308308cf6329060c7ccd3fc372f
author imgteam
date Thu, 04 Apr 2024 15:25:49 +0000
parents 214f548481eb
children cc8fe984ec3e
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0:214f548481eb 1:df211f6b5cf2
1 <tool id="orientationpy" name="Compute image orientation" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="23.0"> 1 <tool id="orientationpy" name="Compute image orientation" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="23.0">
2 <description>with OrientationPy</description> 2 <description>with OrientationPy</description>
3 <macros> 3 <macros>
4 <import>creators.xml</import>
4 <token name="@TOOL_VERSION@">0.2.0.4</token> 5 <token name="@TOOL_VERSION@">0.2.0.4</token>
5 <token name="@VERSION_SUFFIX@">0</token> 6 <token name="@VERSION_SUFFIX@">1</token>
6 </macros> 7 </macros>
8 <creator>
9 <expand macro="creators/bmcv"/>
10 </creator>
7 <edam_operations> 11 <edam_operations>
8 <edam_operation>operation_3443</edam_operation> 12 <edam_operation>operation_3443</edam_operation>
9 </edam_operations> 13 </edam_operations>
10 <xrefs> 14 <xrefs>
11 <xref type="biii">orientationj</xref> 15 <xref type="biii">orientationj</xref>
12 </xrefs> 16 </xrefs>
13 <requirements> 17 <requirements>
14 <requirement type="package" version="0.2.0.4">orientationpy</requirement> 18 <requirement type="package" version="@TOOL_VERSION@">orientationpy</requirement>
15 <requirement type="package" version="0.22.0">scikit-image</requirement> 19 <requirement type="package" version="0.22.0">scikit-image</requirement>
16 </requirements> 20 </requirements>
17 <command><![CDATA[ 21 <command><![CDATA[
18 22
19 ## Inputs 23 ## Inputs
81 </assert_contents> 85 </assert_contents>
82 </output> 86 </output>
83 </test> 87 </test>
84 </tests> 88 </tests>
85 <help> 89 <help>
86 Compute the orientation of 2-D images in degrees using OrientationPy. 90
91 **Computes the orientation of 2-D images in degrees using OrientationPy.**
87 92
88 OrientationPy is the pythonic successor to the well-loved OrientationJ Fiji Plugin. 93 OrientationPy is the pythonic successor to the well-loved OrientationJ Fiji Plugin.
89 It is a library that takes in images and computes the orientation of the greylevels. 94 It is a library that takes in images and computes the orientation of the greylevels.
90 A key step is the computation of image gradients, for a number of different techniques is supported. 95 A key step is the computation of image gradients, for a number of different techniques is supported.
91 96
92 For more information on ``--min_energy`` and ``--min_coherency`` see: https://epfl-center-for-imaging.gitlab.io/orientationpy/orientationpy_examples/plot_fibres_2d.html#plot-hsv-composition 97 For more information on ``--min_energy`` and ``--min_coherency`` see: https://epfl-center-for-imaging.gitlab.io/orientationpy/orientationpy_examples/plot_fibres_2d.html#plot-hsv-composition
98
93 </help> 99 </help>
94 <citations> 100 <citations>
95 <citation type="doi">10.1007/s10237-011-0325-z</citation> 101 <citation type="doi">10.1007/s10237-011-0325-z</citation>
96 </citations> 102 </citations>
97 </tool> 103 </tool>