Mercurial > repos > imgteam > orientationpy

changeset 1:df211f6b5cf2 draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/orientationpy commit c045f067a57e8308308cf6329060c7ccd3fc372f
author imgteam
date Thu, 04 Apr 2024 15:25:49 +0000
parents 214f548481eb
children cc8fe984ec3e
files creators.xml orientationpy.xml
diffstat 2 files changed, 32 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/creators.xml	Thu Apr 04 15:25:49 2024 +0000
@@ -0,0 +1,23 @@
+<macros>
+
+    <xml name="creators/bmcv">
+        <organization name="Biomedical Computer Vision Group, Heidelberg Universtiy" alternateName="BMCV" url="http://www.bioquant.uni-heidelberg.de/research/groups/biomedical_computer_vision.html" />
+        <yield />
+    </xml>
+
+    <xml name="creators/alliecreason">
+        <person givenName="Allison" familyName="Creason"/>
+        <yield/>
+    </xml>
+
+    <xml name="creators/bugraoezdemir">
+        <person givenName="Bugra" familyName="Oezdemir"/>
+        <yield/>
+    </xml>
+
+    <xml name="creators/thawn">
+        <person givenName="Till" familyName="Korten"/>
+        <yield/>
+    </xml>
+    
+</macros>
--- a/orientationpy.xml	Tue Mar 12 10:54:40 2024 +0000
+++ b/orientationpy.xml	Thu Apr 04 15:25:49 2024 +0000
@@ -1,9 +1,13 @@
 <tool id="orientationpy" name="Compute image orientation" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="23.0">
     <description>with OrientationPy</description>
     <macros>
+        <import>creators.xml</import>
         <token name="@TOOL_VERSION@">0.2.0.4</token>
-        <token name="@VERSION_SUFFIX@">0</token>
+        <token name="@VERSION_SUFFIX@">1</token>
     </macros>
+    <creator>
+        <expand macro="creators/bmcv"/>
+    </creator>
     <edam_operations>
         <edam_operation>operation_3443</edam_operation>
     </edam_operations>
@@ -11,7 +15,7 @@
         <xref type="biii">orientationj</xref>
     </xrefs>
     <requirements>
-        <requirement type="package" version="0.2.0.4">orientationpy</requirement>
+        <requirement type="package" version="@TOOL_VERSION@">orientationpy</requirement>
         <requirement type="package" version="0.22.0">scikit-image</requirement>
     </requirements>
     <command><![CDATA[
@@ -83,13 +87,15 @@
         </test>
     </tests>
     <help>
-        Compute the orientation of 2-D images in degrees using OrientationPy.
+
+        **Computes the orientation of 2-D images in degrees using OrientationPy.**
 
         OrientationPy is the pythonic successor to the well-loved OrientationJ Fiji Plugin.
         It is a library that takes in images and computes the orientation of the greylevels.
         A key step is the computation of image gradients, for a number of different techniques is supported.
 
         For more information on ``--min_energy`` and ``--min_coherency`` see: https://epfl-center-for-imaging.gitlab.io/orientationpy/orientationpy_examples/plot_fibres_2d.html#plot-hsv-composition
+
     </help>
     <citations>
         <citation type="doi">10.1007/s10237-011-0325-z</citation>