Mercurial > repos > imgteam > overlay_moving_and_fixed_image

comparison overlay_moving_and_fixed_image.py @ 1:bc324ec66719 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/overlay_moving_and_fixed_image/ commit 3d389fdec0db29cf6fbd783c0501455bf624fa90"
author imgteam
date Wed, 18 Dec 2019 05:02:39 -0500
parents 165a9330fc90
children b4fc6e09e576
comparison
equal deleted inserted replaced
0:165a9330fc90 1:bc324ec66719
27 for i in range(0, (tf_coords.shape[0]//batch_size+1)): 27 for i in range(0, (tf_coords.shape[0]//batch_size+1)):
28 tf_coords[batch_size*i:batch_size*(i+1)] = coord_map(tf_coords[batch_size*i:batch_size*(i+1)]) 28 tf_coords[batch_size*i:batch_size*(i+1)] = coord_map(tf_coords[batch_size*i:batch_size*(i+1)])
29 tf_coords = tf_coords.T.reshape((-1, cols, rows)).swapaxes(1, 2) 29 tf_coords = tf_coords.T.reshape((-1, cols, rows)).swapaxes(1, 2)
30 30
31 _stackcopy(coords[1, ...], tf_coords[0, ...]) 31 _stackcopy(coords[1, ...], tf_coords[0, ...])
32 _stackcopy(coords[0, ...], tf_coords[1, ...]) 32 _stackcopy(coords[0, ...], tf_coords[1, ...])
33 if len(shape) == 3: 33 if len(shape) == 3:
34 coords[2, ...] = range(shape[2]) 34 coords[2, ...] = range(shape[2])
35 35
36 return coords 36 return coords
37 37
45 def overlay(moving_image, fixed_image, factor, overlay_out_path): 45 def overlay(moving_image, fixed_image, factor, overlay_out_path):
46 moving_image = Image.fromarray(moving_image).convert("RGBA") 46 moving_image = Image.fromarray(moving_image).convert("RGBA")
47 fixed_image = Image.fromarray(fixed_image).convert("RGBA") 47 fixed_image = Image.fromarray(fixed_image).convert("RGBA")
48 overlay_out = Image.blend(moving_image, fixed_image, factor) 48 overlay_out = Image.blend(moving_image, fixed_image, factor)
49 overlay_out.save(overlay_out_path, "PNG") 49 overlay_out.save(overlay_out_path, "PNG")
50 50
51 51
52 if __name__=="__main__": 52 if __name__=="__main__":
53 parser = argparse.ArgumentParser(description = "Overlay two images") 53 parser = argparse.ArgumentParser(description = "Overlay two images")
54 parser.add_argument("fixed_image", help = "Path to fixed image") 54 parser.add_argument("fixed_image", help = "Path to fixed image")
55 parser.add_argument("moving_image", help = "Path to moving image") 55 parser.add_argument("moving_image", help = "Path to moving image")