Mercurial > repos > imgteam > overlay_segmentation_mask

changeset 1:8ad39f493587 draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/overlay_segmentation_mask/ commit b2acc1845a25828181597fe5b6982fe116a7796d
author imgteam
date Mon, 22 Jul 2019 05:03:51 -0400
parents 63b2a10b1001
children 22e573b7dcb1
files overlay_segmentation_mask.py overlay_segmentation_mask.xml
diffstat 2 files changed, 6 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/overlay_segmentation_mask.py	Sat Feb 09 14:41:11 2019 -0500
+++ b/overlay_segmentation_mask.py	Mon Jul 22 05:03:51 2019 -0400
@@ -9,7 +9,7 @@
 #TODO make importable by python script
 
 import skimage.io
-import skimage.measure
+import skimage.measure 
 
 parser = argparse.ArgumentParser()
 parser.add_argument('input_file', type=argparse.FileType('r'), help='input file')
@@ -38,4 +38,4 @@
     plt.imshow(img)
 plt.contour(label, linewidths=args.thickness, colors=args.stroke_color)
 
-fig.canvas.print_png(args.out_file)
\ No newline at end of file
+fig.canvas.print_png(args.out_file)
--- a/overlay_segmentation_mask.xml	Sat Feb 09 14:41:11 2019 -0500
+++ b/overlay_segmentation_mask.xml	Mon Jul 22 05:03:51 2019 -0400
@@ -1,10 +1,11 @@
-<tool id="ip_overlay_segmentation" name="Overlay Segmentation Mask" version="0.0.6">
+<tool id="ip_overlay_segmentation" name="Overlay Segmentation Mask" version="0.0.6"> 
     <description>Overlay Segmentation Mask</description>
     <requirements>
-        <requirement type="package" version="0.14.2">scikit-image</requirement>
+        <requirement type="package" version="0.14.2">scikit-image</requirement> 
         <requirement type="package" version="3.0.2">matplotlib</requirement>
         <requirement type="package" version="5.3.0">pillow</requirement>
-        <requirement type="package" version="0.10.0">tifffile</requirement>
+        <requirement type="package" version="0.15.1">tifffile</requirement>
+        <requirement type="package" version="1.16.0">numpy</requirement>
     </requirements>
     <command detect_errors="aggressive"><![CDATA[
         python '$__tool_directory__/overlay_segmentation_mask.py'