Mercurial > repos > imgteam > points2binaryimage

comparison points2binaryimage.xml @ 0:dd513c9f5230 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/points2binaryimage/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
author imgteam
date Sat, 09 Feb 2019 14:43:25 -0500
parents
children 90385ec28b34
comparison
equal deleted inserted replaced
-1:000000000000 0:dd513c9f5230
1 <tool id="ip_points_to_binaryimage" name="Points to Binary Image" version="0.1">
2 <description>Converts points to a binary image</description>
3 <requirements>
4 <requirement type="package" version="0.14.2">scikit-image</requirement>
5 <requirement type="package" version="1.15.4">numpy</requirement>
6 <requirement type="package" version="0.23.4">pandas</requirement>
7 <requirement type="package" version="2018.7">pytz</requirement><!--pandas seems to have additional requirements that are not automatically installed-->
8 <requirement type="package" version="2.4.1">dateutil</requirement>
9 </requirements>
10 <command>
11 <![CDATA[
12 python '$__tool_directory__/points2binaryimage.py' '$input' '$output' $shapex $shapey $has_header $invert_xy
13 ]]>
14 </command>
15 <inputs>
16 <param name="input" type="data" format="tabular" label="CSV point file"/>
17 <param name="shapex" type="integer" value="500" optional="true" min="1" max="2000" label="Width of output image" />
18 <param name="shapey" type="integer" value="500" optional="true" min="1" max="2000" label="Height of output image" />
19 <param name="has_header" type="boolean" checked="false" truevalue="--has_header True" falsevalue="" optional="true" label="Does point file contain header?" />
20 <param name="invert_xy" type="boolean" checked="false" falsevalue="" truevalue="--invert_xy True" optional="true" label="Inverts x and y in CSV point file" />
21 </inputs>
22 <outputs>
23 <data name="output" format="tiff" />
24 </outputs>
25 <tests>
26 <test>
27 <param name="input" value="points.tsv" />
28 <param name="shapex" value="20" />
29 <param name="shapey" value="30" />
30 <param name="has_header" value="false" />
31 <param name="invert_xy" value="true" />
32 <output name="output" ftype="tiff" file="out.tiff" compare="sim_size"/>
33 </test>
34 </tests>
35 <help>
36 **What it does**
37
38 Converts CSV point file to binary image.
39 </help>
40 <citations>
41 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
42 </citations>
43 </tool>