Mercurial > repos > imgteam > points2binaryimage
diff points2binaryimage.xml @ 0:dd513c9f5230 draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/points2binaryimage/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
author | imgteam |
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date | Sat, 09 Feb 2019 14:43:25 -0500 |
parents | |
children | 90385ec28b34 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/points2binaryimage.xml Sat Feb 09 14:43:25 2019 -0500 @@ -0,0 +1,43 @@ +<tool id="ip_points_to_binaryimage" name="Points to Binary Image" version="0.1"> + <description>Converts points to a binary image</description> + <requirements> + <requirement type="package" version="0.14.2">scikit-image</requirement> + <requirement type="package" version="1.15.4">numpy</requirement> + <requirement type="package" version="0.23.4">pandas</requirement> + <requirement type="package" version="2018.7">pytz</requirement><!--pandas seems to have additional requirements that are not automatically installed--> + <requirement type="package" version="2.4.1">dateutil</requirement> + </requirements> + <command> + <![CDATA[ + python '$__tool_directory__/points2binaryimage.py' '$input' '$output' $shapex $shapey $has_header $invert_xy + ]]> + </command> + <inputs> + <param name="input" type="data" format="tabular" label="CSV point file"/> + <param name="shapex" type="integer" value="500" optional="true" min="1" max="2000" label="Width of output image" /> + <param name="shapey" type="integer" value="500" optional="true" min="1" max="2000" label="Height of output image" /> + <param name="has_header" type="boolean" checked="false" truevalue="--has_header True" falsevalue="" optional="true" label="Does point file contain header?" /> + <param name="invert_xy" type="boolean" checked="false" falsevalue="" truevalue="--invert_xy True" optional="true" label="Inverts x and y in CSV point file" /> + </inputs> + <outputs> + <data name="output" format="tiff" /> + </outputs> + <tests> + <test> + <param name="input" value="points.tsv" /> + <param name="shapex" value="20" /> + <param name="shapey" value="30" /> + <param name="has_header" value="false" /> + <param name="invert_xy" value="true" /> + <output name="output" ftype="tiff" file="out.tiff" compare="sim_size"/> + </test> + </tests> + <help> + **What it does** + + Converts CSV point file to binary image. + </help> + <citations> + <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> + </citations> +</tool>