Mercurial > repos > imgteam > segmetrics
changeset 2:c90b52773d2e draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/segmetrics/ commit fc2ed9f0259912912507567c81241f695dc8c33a
| author | imgteam |
|---|---|
| date | Sat, 08 Oct 2022 19:54:28 +0000 |
| parents | 3a7310406943 |
| children | c496306c1cba |
| files | run-segmetrics.py test-data/results1.csv test-data/results2.csv |
| diffstat | 3 files changed, 7 insertions(+), 7 deletions(-) [+] |
line wrap: on
line diff
--- a/run-segmetrics.py Sat Oct 08 17:19:48 2022 +0000 +++ b/run-segmetrics.py Sat Oct 08 19:54:28 2022 +0000 @@ -128,6 +128,6 @@ # write results with open(args.results, 'w', newline='') as fout: - csv_writer = csv.writer(fout, delimiter=';', quotechar='|', quoting=csv.QUOTE_MINIMAL) + csv_writer = csv.writer(fout, delimiter=',', quotechar='"', quoting=csv.QUOTE_MINIMAL) for row in rows: csv_writer.writerow(row)
--- a/test-data/results1.csv Sat Oct 08 17:19:48 2022 +0000 +++ b/test-data/results1.csv Sat Oct 08 19:54:28 2022 +0000 @@ -1,2 +1,2 @@ -;Dice;SEG;Jaccard index;Ob. HSD (sym);Ob. NSD;Split;Merge;Spurious;Missing -;0.5473684210526316;0.291005291005291;1.6238374627624792;141.68949443548658;0.8175405481022531;0;1;2;0 +,Dice,SEG,Jaccard index,Ob. HSD (sym),Ob. NSD,Split,Merge,Spurious,Missing +,0.5473684210526316,0.291005291005291,1.6238374627624792,141.68949443548658,0.8175405481022531,0,1,2,0
--- a/test-data/results2.csv Sat Oct 08 17:19:48 2022 +0000 +++ b/test-data/results2.csv Sat Oct 08 19:54:28 2022 +0000 @@ -1,4 +1,4 @@ -;Dice;SEG;Jaccard index;Ob. HSD (sym);Ob. NSD;Split;Merge;Spurious;Missing -directory/img1.png;0.5473684210526316;0.14285714285714285;1.6238374627624792;142.42099468121046;0.7765050343914003;1;0;0;2 -directory/img2.png;0.5473684210526316;0.291005291005291;1.6238374627624792;141.68949443548658;0.8175405481022531;0;1;2;0 -;0.5473684210526316;0.2169312169312169;1.6238374627624792;142.0552445583485;0.7970227912468267;1;1;2;2 +,Dice,SEG,Jaccard index,Ob. HSD (sym),Ob. NSD,Split,Merge,Spurious,Missing +directory/img1.png,0.5473684210526316,0.14285714285714285,1.6238374627624792,142.42099468121046,0.7765050343914003,1,0,0,2 +directory/img2.png,0.5473684210526316,0.291005291005291,1.6238374627624792,141.68949443548658,0.8175405481022531,0,1,2,0 +,0.5473684210526316,0.2169312169312169,1.6238374627624792,142.0552445583485,0.7970227912468267,1,1,2,2