Mercurial > repos > imgteam > superdsm

annotate test-data/cfg-full.tsv @ 5:9b4830300f3a draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit c045f067a57e8308308cf6329060c7ccd3fc372f
author imgteam
date Thu, 04 Apr 2024 15:26:50 +0000
parents dc5f72f6b1e9
children
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4
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
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diff changeset
1 Hyperparameter Value
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
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2 AF_scale
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
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3 c2f-region-analysis/AF_min_atom_radius 0.33
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
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4 c2f-region-analysis/enabled True
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
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5 c2f-region-analysis/max_atom_norm_energy 0.05
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
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6 c2f-region-analysis/max_cluster_marker_irregularity 0.2
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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7 c2f-region-analysis/min_atom_radius 30
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
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8 c2f-region-analysis/min_norm_energy_improvement 0.1
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
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9 c2f-region-analysis/seed_connectivity 8
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
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10 dsm/AF_alpha 0.0005
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
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11 dsm/AF_background_margin 0.4
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
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12 dsm/AF_smooth_amount 0.2
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
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13 dsm/AF_smooth_subsample 0.4
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
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14 dsm/alpha 2.116
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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15 dsm/background_margin 26
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
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16 dsm/cachesize 1
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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17 dsm/cachetest
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
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18 dsm/cp_timeout 300
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
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19 dsm/enabled True
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
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20 dsm/epsilon 1.0
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
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21 dsm/gaussian_shape_multiplier 2
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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22 dsm/init elliptical
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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23 dsm/scale 1000
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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24 dsm/smooth_amount 13
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
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25 dsm/smooth_mat_dtype float32
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
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26 dsm/smooth_mat_max_allocations inf
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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27 dsm/smooth_subsample 26
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
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28 dsm/sparsity_tol 0
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
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29 global-energy-minimization/AF_beta 0.66
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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30 global-energy-minimization/AF_max_seed_distance inf
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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31 global-energy-minimization/beta 2793.1200000000003
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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32 global-energy-minimization/enabled True
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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33 global-energy-minimization/gamma 0.8
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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34 global-energy-minimization/max_iter 5
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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35 global-energy-minimization/max_seed_distance inf
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
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36 global-energy-minimization/max_work_amount 1000000
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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37 global-energy-minimization/pruning exact
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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38 histological False
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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39 postprocess/AF_max_object_radius inf
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
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40 postprocess/AF_min_glare_radius inf
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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41 postprocess/AF_min_object_radius 0.0
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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42 postprocess/contrast_epsilon 0.0001
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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43 postprocess/discard_image_boundary False
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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44 postprocess/enabled True
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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45 postprocess/exterior_offset 5
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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46 postprocess/exterior_scale 5
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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47 postprocess/fill_holes True
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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48 postprocess/glare_detection_min_layer 0.5
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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49 postprocess/glare_detection_num_layers 5
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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50 postprocess/glare_detection_smoothness 3
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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51 postprocess/mask_max_distance 1
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
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52 postprocess/mask_smoothness 3
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
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53 postprocess/mask_stdamp 2.0
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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54 postprocess/max_boundary_eccentricity inf
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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55 postprocess/max_eccentricity 0.99
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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56 postprocess/max_norm_energy 0.2
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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57 postprocess/max_object_radius inf
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
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58 postprocess/min_boundary_glare_radius inf
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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59 postprocess/min_boundary_obj_radius 0
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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60 postprocess/min_contrast 1.35
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
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61 postprocess/min_glare_radius inf
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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62 postprocess/min_object_radius 0.0
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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63 preprocess/AF_sigma2 1.0
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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64 preprocess/enabled True
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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65 preprocess/lower_clip_mean False
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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66 preprocess/offset_clip 3
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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67 preprocess/sigma1 1.4142135623730951
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
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68 preprocess/sigma2 65.05382386916237