Mercurial > repos > imgteam > superdsm

comparison test-data/cfg.tsv @ 4:dc5f72f6b1e9 draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
author imgteam
date Mon, 12 Feb 2024 14:58:45 +0000
parents 7fd8dba15bd3
children
comparison
equal deleted inserted replaced
3:7fd8dba15bd3 4:dc5f72f6b1e9
1 Hyperparameter Value 1 Hyperparameter Value
2 c2f_region_analysis_min_norm_energy_improvement 0.1
3 c2f_region_analysis_max_atom_norm_energy 0.05
4 c2f_region_analysis_max_cluster_marker_irregularity 0.2
5 dsm_AF_alpha 0.0005
6 global_energy_minimization_AF_beta 0.66
7 postprocess_mask_max_distance 1
8 postprocess_mask_stdamp 2.0
9 postprocess_max_norm_energy 0.2
10 postprocess_min_contrast 1.35
11 postprocess_min_object_radius 0.0
12 AF_scale 2 AF_scale
3 c2f-region-analysis/AF_min_atom_radius 0.33
4 c2f-region-analysis/max_atom_norm_energy 0.05
5 c2f-region-analysis/max_cluster_marker_irregularity 0.2
6 c2f-region-analysis/min_atom_radius 30
7 c2f-region-analysis/min_norm_energy_improvement 0.1
8 dsm/AF_alpha 0.0005
9 dsm/AF_background_margin 0.4
10 dsm/AF_smooth_amount 0.2
11 dsm/AF_smooth_subsample 0.4
12 dsm/alpha 2.116
13 dsm/background_margin 26
14 dsm/smooth_amount 13
15 dsm/smooth_subsample 26
16 global-energy-minimization/AF_beta 0.66
17 global-energy-minimization/AF_max_seed_distance inf
18 global-energy-minimization/beta 2793.1200000000003
19 global-energy-minimization/max_seed_distance inf
20 global-energy-minimization/pruning exact
21 postprocess/AF_max_object_radius inf
22 postprocess/AF_min_glare_radius inf
23 postprocess/AF_min_object_radius 0.0
24 postprocess/mask_max_distance 1
25 postprocess/mask_stdamp 2.0
26 postprocess/max_norm_energy 0.2
27 postprocess/max_object_radius inf
28 postprocess/min_contrast 1.35
29 postprocess/min_glare_radius inf
30 postprocess/min_object_radius 0.0
13 preprocess/AF_sigma2 1.0 31 preprocess/AF_sigma2 1.0
14 preprocess/sigma2 65.05382386916237 32 preprocess/sigma2 65.05382386916237
15 preprocess/enabled True
16 preprocess/sigma1 1.4142135623730951
17 preprocess/offset_clip 3
18 preprocess/lower_clip_mean False
19 dsm/AF_alpha 0.0005
20 dsm/alpha 2.116
21 dsm/AF_smooth_amount 0.2
22 dsm/smooth_amount 13
23 dsm/AF_smooth_subsample 0.4
24 dsm/smooth_subsample 26
25 dsm/AF_background_margin 0.4
26 dsm/background_margin 26
27 dsm/enabled True
28 dsm/cachesize 1
29 dsm/cachetest
30 dsm/sparsity_tol 0
31 dsm/init elliptical
32 dsm/epsilon 1.0
33 dsm/scale 1000
34 dsm/gaussian_shape_multiplier 2
35 dsm/smooth_mat_dtype float32
36 dsm/smooth_mat_max_allocations inf
37 dsm/cp_timeout 300
38 c2f-region-analysis/AF_min_atom_radius 0.33
39 c2f-region-analysis/min_atom_radius 30
40 c2f-region-analysis/enabled True
41 c2f-region-analysis/seed_connectivity 8
42 c2f-region-analysis/max_atom_norm_energy 0.05
43 c2f-region-analysis/min_norm_energy_improvement 0.1
44 c2f-region-analysis/max_cluster_marker_irregularity 0.2
45 global-energy-minimization/AF_beta 0.66
46 global-energy-minimization/beta 2793.1200000000003
47 global-energy-minimization/AF_max_seed_distance inf
48 global-energy-minimization/max_seed_distance inf
49 global-energy-minimization/enabled True
50 global-energy-minimization/strict True
51 global-energy-minimization/max_iter 5
52 global-energy-minimization/gamma 0.8
53 global-energy-minimization/max_work_amount 1000000
54 postprocess/AF_min_object_radius 0.0
55 postprocess/min_object_radius 0.0
56 postprocess/AF_max_object_radius inf
57 postprocess/max_object_radius inf
58 postprocess/AF_min_glare_radius inf
59 postprocess/min_glare_radius inf
60 postprocess/enabled True
61 postprocess/max_norm_energy 0.2
62 postprocess/discard_image_boundary False
63 postprocess/min_boundary_obj_radius 0
64 postprocess/max_eccentricity 0.99
65 postprocess/max_boundary_eccentricity inf
66 postprocess/exterior_scale 5
67 postprocess/exterior_offset 5
68 postprocess/min_contrast 1.35
69 postprocess/contrast_epsilon 0.0001
70 postprocess/mask_stdamp 2
71 postprocess/mask_max_distance 1
72 postprocess/mask_smoothness 3
73 postprocess/fill_holes True
74 postprocess/glare_detection_smoothness 3
75 postprocess/glare_detection_num_layers 5
76 postprocess/glare_detection_min_layer 0.5
77 postprocess/min_boundary_glare_radius inf
78 histological False