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annotate test-data/cfg.tsv @ 4:dc5f72f6b1e9 draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
author imgteam
date Mon, 12 Feb 2024 14:58:45 +0000
parents 7fd8dba15bd3
children
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3
7fd8dba15bd3 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit fea6c8161c4b3e6394fe035b12b69b73e6fa7d75
imgteam
parents:
diff changeset
1 Hyperparameter Value
7fd8dba15bd3 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit fea6c8161c4b3e6394fe035b12b69b73e6fa7d75
imgteam
parents:
diff changeset
2 AF_scale
4
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
parents: 3
diff changeset
3 c2f-region-analysis/AF_min_atom_radius 0.33
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
parents: 3
diff changeset
4 c2f-region-analysis/max_atom_norm_energy 0.05
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
parents: 3
diff changeset
5 c2f-region-analysis/max_cluster_marker_irregularity 0.2
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
parents: 3
diff changeset
6 c2f-region-analysis/min_atom_radius 30
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
parents: 3
diff changeset
7 c2f-region-analysis/min_norm_energy_improvement 0.1
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
parents: 3
diff changeset
8 dsm/AF_alpha 0.0005
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
parents: 3
diff changeset
9 dsm/AF_background_margin 0.4
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
parents: 3
diff changeset
10 dsm/AF_smooth_amount 0.2
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
parents: 3
diff changeset
11 dsm/AF_smooth_subsample 0.4
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
parents: 3
diff changeset
12 dsm/alpha 2.116
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
parents: 3
diff changeset
13 dsm/background_margin 26
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
parents: 3
diff changeset
14 dsm/smooth_amount 13
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
parents: 3
diff changeset
15 dsm/smooth_subsample 26
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
parents: 3
diff changeset
16 global-energy-minimization/AF_beta 0.66
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
parents: 3
diff changeset
17 global-energy-minimization/AF_max_seed_distance inf
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
parents: 3
diff changeset
18 global-energy-minimization/beta 2793.1200000000003
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
parents: 3
diff changeset
19 global-energy-minimization/max_seed_distance inf
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
parents: 3
diff changeset
20 global-energy-minimization/pruning exact
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
parents: 3
diff changeset
21 postprocess/AF_max_object_radius inf
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
parents: 3
diff changeset
22 postprocess/AF_min_glare_radius inf
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
parents: 3
diff changeset
23 postprocess/AF_min_object_radius 0.0
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
parents: 3
diff changeset
24 postprocess/mask_max_distance 1
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
parents: 3
diff changeset
25 postprocess/mask_stdamp 2.0
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
parents: 3
diff changeset
26 postprocess/max_norm_energy 0.2
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
parents: 3
diff changeset
27 postprocess/max_object_radius inf
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
parents: 3
diff changeset
28 postprocess/min_contrast 1.35
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
parents: 3
diff changeset
29 postprocess/min_glare_radius inf
dc5f72f6b1e9 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit b0b09d6788778541d1c0b89ca96101fc57d60e22
imgteam
parents: 3
diff changeset
30 postprocess/min_object_radius 0.0
3
7fd8dba15bd3 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit fea6c8161c4b3e6394fe035b12b69b73e6fa7d75
imgteam
parents:
diff changeset
31 preprocess/AF_sigma2 1.0
7fd8dba15bd3 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit fea6c8161c4b3e6394fe035b12b69b73e6fa7d75
imgteam
parents:
diff changeset
32 preprocess/sigma2 65.05382386916237