annotate cravat_submit/cravat_submit.xml @ 15:a46b42bda5d7 draft

Uploaded
author in_silico
date Tue, 12 Jun 2018 12:05:40 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
15
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
1 <tool id="cravat_submit" name="CRAVAT Submit, Check, and Retrieve" version="0.1.0">
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
2 <description>Submits, checks for, and retrieves data for cancer annotation</description>
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
3 <command interpreter="python">cravat_submit.py $input $dropdown $output</command>
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
4
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
5
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
6 <inputs>
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
7
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
8 <param format="tabular" name="input" type="data" label="Source file"> </param>
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
9 <param format="tabular" name="dropdown" type="select" label="Analysis Program">
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
10 <option value="None">None</option>
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
11 <option value="VEST">VEST</option>
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
12 <option value="CHASM">CHASM</option>
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
13 <option value="VEST;CHASM">VEST and CHASM</option>
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
14 </param>
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
15
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
16
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
17 </inputs>
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
18
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
19 <outputs>
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
20 <data format="tabular" name="output" />
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
21 </outputs>
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
22
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
23 <tests>
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
24 <test>
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
25 <param name="input" value="fa_gc_content_input.fa"/>
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
26 <output name="out_file1" file="fa_gc_content_output.txt"/>
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
27 </test>
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
28 </tests>
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
29
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
30 <help>
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
31 This tool submits, checks for, and retrieves data for cancer annotation.
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
32 </help>
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
33
a46b42bda5d7 Uploaded
in_silico
parents:
diff changeset
34 </tool>