Mercurial > repos > in_silico > cravat_annotate_mutations

comparison cravat_submit/cravat_submit.xml @ 15:a46b42bda5d7 draft

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author in_silico
date Tue, 12 Jun 2018 12:05:40 -0400
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14:a28f1f52eb93 15:a46b42bda5d7
1 <tool id="cravat_submit" name="CRAVAT Submit, Check, and Retrieve" version="0.1.0">
2 <description>Submits, checks for, and retrieves data for cancer annotation</description>
3 <command interpreter="python">cravat_submit.py $input $dropdown $output</command>
4
5
6 <inputs>
7
8 <param format="tabular" name="input" type="data" label="Source file"> </param>
9 <param format="tabular" name="dropdown" type="select" label="Analysis Program">
10 <option value="None">None</option>
11 <option value="VEST">VEST</option>
12 <option value="CHASM">CHASM</option>
13 <option value="VEST;CHASM">VEST and CHASM</option>
14 </param>
15
16
17 </inputs>
18
19 <outputs>
20 <data format="tabular" name="output" />
21 </outputs>
22
23 <tests>
24 <test>
25 <param name="input" value="fa_gc_content_input.fa"/>
26 <output name="out_file1" file="fa_gc_content_output.txt"/>
27 </test>
28 </tests>
29
30 <help>
31 This tool submits, checks for, and retrieves data for cancer annotation.
32 </help>
33
34 </tool>