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1 #This file lists the names of chemical modifications accepted by OMMSA
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2 #
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3 #
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4 2-amino-3-oxo-butanoic acid T 2-amino-3-oxo-butanoicacidt_ 23 2-amino-3-oxo-butanoicacidt_
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5 Asparagine HexNAc asparaginehexnac_ 182 asparaginehexnac_
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6 Asparagine dHexHexNAc asparaginedhexhexnac_ 183 asparaginedhexhexnac_
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7 CAMthiopropanoyl K camthiopropanoylk_ 131 camthiopropanoylk_
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8 CHD2-di-methylation of K chd2-di-methylationofk_ 189 chd2-di-methylationofk_
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9 CHD2-di-methylation of peptide n-term chd2-di-methylationofpeptiden-term_ 190 chd2-di-methylationofpeptiden-term_
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10 ICAT heavy icatheavy_ 130 icatheavy_
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11 ICAT light icatlight_ 129 icatlight_
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12 M cleavage from protein n-term mcleavagefromproteinn-term_ 9 mcleavagefromproteinn-term_
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13 MMTS on C mmtsonc_ 179 mmtsonc_
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14 Maleimide-PEO2-Biotin of C maleimide-peo2-biotinofc_ 191 maleimide-peo2-biotinofc_
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15 NEM C nemc_ 83 nemc_
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16 NIPCAM nipcam_ 84 nipcam_
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17 O18 on peptide n-term o18onpeptiden-term_ 87 o18onpeptiden-term_
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18 PNGasF in O18 water pngasfino18water_ 139 pngasfino18water_
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19 SeMet semet_ 113 semet_
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20 Serine HexNAc serinehexnac_ 184 serinehexnac_
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21 TMT 6-plex on K tmt6-plexonk_ 198 tmt6-plexonk_
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22 TMT 6-plex on n-term peptide tmt6-plexonn-termpeptide_ 199 tmt6-plexonn-termpeptide_
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23 Threonine HexNAc threoninehexnac_ 185 threoninehexnac_
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24 Uniblue A on K uniblueaonk_ 195 uniblueaonk_
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25 acetylation of K acetylationofk_ 24 acetylationofk_
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26 acetylation of protein n-term acetylationofproteinn-term_ 10 acetylationofproteinn-term_
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27 amidation of peptide c-term amidationofpeptidec-term_ 25 amidationofpeptidec-term_
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28 arginine to ornithine argininetoornithine_ 163 argininetoornithine_
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29 beta elimination of S betaeliminationofs_ 140 betaeliminationofs_
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30 beta elimination of T betaeliminationoft_ 141 betaeliminationoft_
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31 beta methythiolation of D betamethythiolationofd_ 13 betamethythiolationofd_
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32 beta-carboxylation of D beta-carboxylationofd_ 47 beta-carboxylationofd_
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33 beta-methylthiolation of D (duplicate of 13) beta-methylthiolationofd_duplicateof13__ 26 beta-methylthiolationofd_duplicateof13__
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34 carbamidomethyl C carbamidomethylc_ 3 carbamidomethylc_
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35 carbamylation of K carbamylationofk_ 31 carbamylationofk_
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36 carbamylation of n-term peptide carbamylationofn-termpeptide_ 32 carbamylationofn-termpeptide_
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37 carboxyamidomethylation of D carboxyamidomethylationofd_ 29 carboxyamidomethylationofd_
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38 carboxyamidomethylation of E carboxyamidomethylationofe_ 30 carboxyamidomethylationofe_
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39 carboxyamidomethylation of H carboxyamidomethylationofh_ 28 carboxyamidomethylationofh_
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40 carboxyamidomethylation of K carboxyamidomethylationofk_ 27 carboxyamidomethylationofk_
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41 carboxykynurenin of W carboxykynureninofw_ 165 carboxykynureninofw_
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42 carboxymethyl C carboxymethylc_ 2 carboxymethylc_
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43 carboxymethylated selenocysteine carboxymethylatedselenocysteine_ 207 carboxymethylatedselenocysteine_
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44 citrullination of R citrullinationofr_ 33 citrullinationofr_
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45 deamidation of N deamidationofn_ 196 deamidationofn_
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46 deamidation of N and Q deamidationofnandq_ 4 deamidationofnandq_
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47 dehydro of S and T dehydroofsandt_ 164 dehydroofsandt_
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48 di-O18 on peptide n-term di-o18onpeptiden-term_ 88 di-o18onpeptiden-term_
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49 di-iodination of Y di-iodinationofy_ 35 di-iodinationofy_
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50 di-methylation of K di-methylationofk_ 36 di-methylationofk_
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51 di-methylation of R di-methylationofr_ 37 di-methylationofr_
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52 di-methylation of peptide n-term di-methylationofpeptiden-term_ 38 di-methylationofpeptiden-term_
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53 farnesylation of C farnesylationofc_ 42 farnesylationofc_
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54 fluorophenylalanine fluorophenylalanine_ 46 fluorophenylalanine_
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55 formylation of K formylationofk_ 43 formylationofk_
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56 formylation of peptide n-term formylationofpeptiden-term_ 44 formylationofpeptiden-term_
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57 formylation of protein n-term formylationofproteinn-term_ 82 formylationofproteinn-term_
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58 gamma-carboxylation of E gamma-carboxylationofe_ 48 gamma-carboxylationofe_
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59 gammathiopropionylation of K gammathiopropionylationofk_ 40 gammathiopropionylationofk_
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60 gammathiopropionylation of peptide n-term gammathiopropionylationofpeptiden-term_ 41 gammathiopropionylationofpeptiden-term_
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61 geranyl-geranyl geranyl-geranyl_ 49 geranyl-geranyl_
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62 glucuronylation of protein n-term glucuronylationofproteinn-term_ 50 glucuronylationofproteinn-term_
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63 glutathione disulfide glutathionedisulfide_ 51 glutathionedisulfide_
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64 guanidination of K guanidinationofk_ 53 guanidinationofk_
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65 heavy arginine-13C6 heavyarginine-13c6_ 136 heavyarginine-13c6_
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66 heavy arginine-13C6-15N4 heavyarginine-13c6-15n4_ 137 heavyarginine-13c6-15n4_
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67 heavy lysine - 13C6 15N2 heavylysine-13c615n2_ 181 heavylysine-13c615n2_
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68 heavy lysine - 2H4 heavylysine-2h4_ 180 heavylysine-2h4_
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69 heavy lysine-13C6 heavylysine-13c6_ 138 heavylysine-13c6_
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70 homoserine homoserine_ 56 homoserine_
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71 homoserine lactone homoserinelactone_ 57 homoserinelactone_
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72 hydroxylation of Y hydroxylationofy_ 64 hydroxylationofy_
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73 hydroxylation of D hydroxylationofd_ 59 hydroxylationofd_
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74 hydroxylation of F hydroxylationoff_ 63 hydroxylationoff_
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75 hydroxylation of K hydroxylationofk_ 60 hydroxylationofk_
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76 hydroxylation of N hydroxylationofn_ 61 hydroxylationofn_
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77 hydroxylation of P hydroxylationofp_ 62 hydroxylationofp_
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78 iTRAQ114 on K itraq114onk_ 168 itraq114onk_
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79 iTRAQ114 on Y itraq114ony_ 169 itraq114ony_
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80 iTRAQ114 on nterm itraq114onnterm_ 167 itraq114onnterm_
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81 iTRAQ115 on K itraq115onk_ 171 itraq115onk_
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82 iTRAQ115 on Y itraq115ony_ 172 itraq115ony_
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83 iTRAQ115 on nterm itraq115onnterm_ 170 itraq115onnterm_
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84 iTRAQ116 on K itraq116onk_ 174 itraq116onk_
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85 iTRAQ116 on Y itraq116ony_ 175 itraq116ony_
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86 iTRAQ116 on nterm itraq116onnterm_ 173 itraq116onnterm_
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87 iTRAQ117 on K itraq117onk_ 177 itraq117onk_
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88 iTRAQ117 on Y itraq117ony_ 178 itraq117ony_
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89 iTRAQ117 on nterm itraq117onnterm_ 176 itraq117onnterm_
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90 iTRAQ8plex itraq8plex_ 204 itraq8plex_
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91 iTRAQ8plex itraq8plex_ 205 itraq8plex_
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92 iTRAQ8plex itraq8plex_ 203 itraq8plex_
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93 iTRAQ8plex itraq8plex_ 201 itraq8plex_
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94 iTRAQ8plex itraq8plex_ 202 itraq8plex_
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95 iTRAQ8plex itraq8plex_ 200 itraq8plex_
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96 iodination of Y iodinationofy_ 65 iodinationofy_
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97 lipoyl K lipoylk_ 67 lipoylk_
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98 methyl C methylc_ 73 methylc_
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99 methyl H methylh_ 74 methylh_
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100 methyl N methyln_ 75 methyln_
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101 methyl R methylr_ 77 methylr_
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102 methyl ester of D methylesterofd_ 69 methylesterofd_
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103 methyl ester of E (duplicate of 17) methylesterofe_duplicateof17__ 70 methylesterofe_duplicateof17__
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104 methyl ester of S methylesterofs_ 71 methylesterofs_
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105 methyl ester of Y methylesterofy_ 72 methylesterofy_
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106 methyl ester of peptide c-term (duplicate of 18) methylesterofpeptidec-term_duplicateof18__ 68 methylesterofpeptidec-term_duplicateof18__
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107 methylation of D methylationofd_ 16 methylationofd_
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108 methylation of E methylationofe_ 17 methylationofe_
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109 methylation of K methylationofk_ 0 methylationofk_
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110 methylation of Q methylationofq_ 14 methylationofq_
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111 methylation of peptide c-term methylationofpeptidec-term_ 18 methylationofpeptidec-term_
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112 methylation of peptide n-term methylationofpeptiden-term_ 76 methylationofpeptiden-term_
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113 methylation of protein n-term methylationofproteinn-term_ 11 methylationofproteinn-term_
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114 myristoleylation of G myristoleylationofg_ 78 myristoleylationofg_
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115 myristoyl-4H of G myristoyl-4hofg_ 79 myristoyl-4hofg_
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116 myristoylation of K myristoylationofk_ 81 myristoylationofk_
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117 myristoylation of peptide n-term G myristoylationofpeptiden-termg_ 80 myristoylationofpeptiden-termg_
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118 n-acyl diglyceride cysteine n-acyldiglyceridecysteine_ 118 n-acyldiglyceridecysteine_
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119 n-formyl met addition n-formylmetaddition_ 22 n-formylmetaddition_
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120 oxidation of C oxidationofc_ 193 oxidationofc_
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121 oxidation of C to cysteic acid oxidationofctocysteicacid_ 34 oxidationofctocysteicacid_
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122 oxidation of C to sulfinic acid oxidationofctosulfinicacid_ 162 oxidationofctosulfinicacid_
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123 oxidation of F to dihydroxyphenylalanine oxidationofftodihydroxyphenylalanine_ 39 oxidationofftodihydroxyphenylalanine_
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124 oxidation of H oxidationofh_ 89 oxidationofh_
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125 oxidation of H to D oxidationofhtod_ 55 oxidationofhtod_
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126 oxidation of H to N oxidationofhton_ 54 oxidationofhton_
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127 oxidation of M oxidationofm_ 1 oxidationofm_
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128 oxidation of P to pyroglutamic acid oxidationofptopyroglutamicacid_ 111 oxidationofptopyroglutamicacid_
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129 oxidation of W oxidationofw_ 90 oxidationofw_
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130 oxidation of W to formylkynurenin oxidationofwtoformylkynurenin_ 45 oxidationofwtoformylkynurenin_
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131 oxidation of W to hydroxykynurenin oxidationofwtohydroxykynurenin_ 58 oxidationofwtohydroxykynurenin_
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132 oxidation of W to kynurenin oxidationofwtokynurenin_ 66 oxidationofwtokynurenin_
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133 oxidation of W to nitro oxidationofwtonitro_ 85 oxidationofwtonitro_
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134 oxidation of Y (duplicate of 64) oxidationofy_duplicateof64__ 194 oxidationofy_duplicateof64__
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135 oxidation of Y to nitro oxidationofytonitro_ 86 oxidationofytonitro_
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136 palmitoleyl of C palmitoleylofc_ 187 palmitoleylofc_
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137 palmitoleyl of S palmitoleylofs_ 186 palmitoleylofs_
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138 palmitoleyl of T palmitoleyloft_ 188 palmitoleyloft_
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139 palmitoylation of C palmitoylationofc_ 92 palmitoylationofc_
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140 palmitoylation of K palmitoylationofk_ 93 palmitoylationofk_
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141 palmitoylation of S palmitoylationofs_ 94 palmitoylationofs_
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142 palmitoylation of T palmitoylationoft_ 95 palmitoylationoft_
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143 phosphopantetheine S phosphopantetheines_ 91 phosphopantetheines_
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144 phosphorylation of H phosphorylationofh_ 192 phosphorylationofh_
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145 phosphorylation of S phosphorylationofs_ 6 phosphorylationofs_
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146 phosphorylation of S with ETD loss phosphorylationofswithetdloss_ 134 phosphorylationofswithetdloss_
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147 phosphorylation of S with prompt loss phosphorylationofswithpromptloss_ 96 phosphorylationofswithpromptloss_
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148 phosphorylation of T phosphorylationoft_ 7 phosphorylationoft_
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149 phosphorylation of T with ETD loss phosphorylationoftwithetdloss_ 135 phosphorylationoftwithetdloss_
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150 phosphorylation of T with prompt loss phosphorylationoftwithpromptloss_ 97 phosphorylationoftwithpromptloss_
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151 phosphorylation of Y phosphorylationofy_ 8 phosphorylationofy_
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152 phosphorylation with neutral loss on C phosphorylationwithneutrallossonc_ 99 phosphorylationwithneutrallossonc_
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153 phosphorylation with neutral loss on D phosphorylationwithneutrallossond_ 100 phosphorylationwithneutrallossond_
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154 phosphorylation with neutral loss on H phosphorylationwithneutrallossonh_ 101 phosphorylationwithneutrallossonh_
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155 phosphorylation with neutral loss on S phosphorylationwithneutrallossons_ 132 phosphorylationwithneutrallossons_
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156 phosphorylation with neutral loss on T phosphorylationwithneutrallossont_ 133 phosphorylationwithneutrallossont_
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157 phosphorylation with prompt loss on Y phosphorylationwithpromptlossony_ 98 phosphorylationwithpromptlossony_
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158 propionamide C propionamidec_ 5 propionamidec_
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159 propionyl heavy K propionylheavyk_ 104 propionylheavyk_
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160 propionyl heavy peptide n-term propionylheavypeptiden-term_ 105 propionylheavypeptiden-term_
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161 propionyl light K propionyllightk_ 102 propionyllightk_
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162 propionyl light on peptide n-term propionyllightonpeptiden-term_ 103 propionyllightonpeptiden-term_
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163 pyridyl K pyridylk_ 106 pyridylk_
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164 pyridyl peptide n-term pyridylpeptiden-term_ 107 pyridylpeptiden-term_
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165 pyro-cmC pyro-cmc_ 108 pyro-cmc_
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166 pyro-glu from n-term E pyro-glufromn-terme_ 109 pyro-glufromn-terme_
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167 pyro-glu from n-term Q pyro-glufromn-termq_ 110 pyro-glufromn-termq_
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168 s-pyridylethylation of C s-pyridylethylationofc_ 112 s-pyridylethylationofc_
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169 selenocysteine selenocysteine_ 206 selenocysteine_
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170 sulfation of Y sulfationofy_ 114 sulfationofy_
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171 sulphone of M sulphoneofm_ 115 sulphoneofm_
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172 sumoylation of K sumoylationofk_ 166 sumoylationofk_
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173 tri-deuteromethylation of D tri-deuteromethylationofd_ 19 tri-deuteromethylationofd_
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174 tri-deuteromethylation of E tri-deuteromethylationofe_ 20 tri-deuteromethylationofe_
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175 tri-deuteromethylation of peptide c-term tri-deuteromethylationofpeptidec-term_ 21 tri-deuteromethylationofpeptidec-term_
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176 tri-iodination of Y tri-iodinationofy_ 116 tri-iodinationofy_
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177 tri-methylation of K tri-methylationofk_ 15 tri-methylationofk_
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178 tri-methylation of R tri-methylationofr_ 117 tri-methylationofr_
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179 tri-methylation of protein n-term tri-methylationofproteinn-term_ 12 tri-methylationofproteinn-term_
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180 trideuteration of L (SILAC) trideuterationofl_silac__ 197 trideuterationofl_silac__
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181 ubiquitinylation residue ubiquitinylationresidue_ 52 ubiquitinylationresidue_
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