Mercurial > repos > iracooke > protk
view display_applications/proteomics/PepXml.xml @ 3:255b5b6ec617 draft default tip
Better defaults for omssa
author | Ira Cooke <iracooke@gmail.com> |
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date | Mon, 23 Jul 2012 14:48:31 +1000 |
parents | a929e27eb203 |
children |
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<display id="proteomics_pepxml" version="1.0.0" name="view pepXML in"> <dynamic_links from_file="tool-data/protk_display_site.txt" skip_startswith="#" id="0" name="0"> <!-- Define parameters by column from file --> <dynamic_param name="site_id" value="0"/> <dynamic_param name="site_url" value="1"/> <!-- We define url and params as normal, but values defined in dynamic_param are available by specified name --> <url target_frame="galaxy_main">${site_url}/init_local?file=${encoded_filename.qp}&type=pepxml</url> <param type="data" name="pep_file" viewable="False" format="pepXML"/> <param type="data" dataset="pep_file" name="pepxml_file" format="pepXML" viewable="False" /> <param type="template" name="encoded_filename" strip="True" > #import binascii ${binascii.hexlify( $pepxml_file.file_name )} </param> <param type="template" name="galaxy_url" strip="True" > ${BASE_URL.split(":")[1][2:]} </param> </dynamic_links> </display>