Mercurial > repos > iracooke > protk_msgfplus

comparison tool_dependencies.xml @ 7:a8ae51506967

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Updated dependency info
author iracooke
date Mon, 04 Mar 2013 23:59:59 -0500
parents 6be01b5359b8
children 21c7f6a61d61
comparison
equal deleted inserted replaced
6:87757d28e0d2 7:a8ae51506967
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="msgfplus" version="20130227"> 3 <package name="blast" version="2.2.27">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions> 5 <actions>
6 <action type="download_by_url">https://dl.dropbox.com/u/226794/galaxy_protk.tar.gz</action> 6 <action type="download_by_url">https://dl.dropbox.com/u/226794/galaxy_protk.tar.gz</action>
7 <action type="shell_command">sh install_msgfplus.sh $INSTALL_DIR 1.1.9</action> 7 <action type="shell_command">sh install_blast.sh $INSTALL_DIR 1.2.0</action>
8 <action type="move_file"> 8 <action type="move_file">
9 <source>install_msgfplus.sh</source> 9 <source>install_blast.sh</source>
10 <destination>$INSTALL_DIR</destination> 10 <destination>$INSTALL_DIR</destination>
11 </action> 11 </action>
12 <action type="set_environment"> 12 <action type="set_environment">
13 <environment_variable name="PROTK_MSGFPLUS_ROOT" action="set_to">$INSTALL_DIR</environment_variable> 13 <environment_variable name="PROTK_BLAST_ROOT" action="set_to">$INSTALL_DIR</environment_variable>
14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> 14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
15 </action> 15 </action>
16 </actions> 16 </actions>
17 </install> 17 </install>
18 <readme> 18 <readme>
19 Installs MSGF+ via the protk installer 19 Installs BLAST via the protk installer
20 </readme> 20 </readme>
21 </package> 21 </package>
22 22
23 </tool_dependency> 23 </tool_dependency>