--- a/tool_dependencies.xml	Mon Mar 04 20:06:45 2013 -0500
+++ b/tool_dependencies.xml	Mon Mar 04 20:48:04 2013 -0500
@@ -1,23 +1,17 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="msgfplus" version="20130227">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">https://dl.dropbox.com/u/226794/galaxy_protk.tar.gz</action>
-                <action type="shell_command">sh install_msgfplus.sh $INSTALL_DIR 1.1.9</action>
-                <action type="move_file">
-                    <source>install_msgfplus.sh</source>
-                    <destination>$INSTALL_DIR</destination>
-                </action>
-                <action type="set_environment">
-                    <environment_variable name="PROTK_MSGFPLUS_ROOT" action="set_to">$INSTALL_DIR</environment_variable>
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>
-            Installs MSGF+ via the protk installer
-        </readme>
+
+    <package name="galaxy_protk" version="1.1.9">
+	     <repository toolshed="http://toolshed.g2.bx.psu.edu" name="galaxy_protk" owner="iracooke" changeset_revision="51f7c347c955"/>
     </package>
 
+	<package name="proteowizard" version="3_0_4388">
+	     <repository toolshed="http://toolshed.g2.bx.psu.edu" name="protk_proteowizard" owner="iracooke" changeset_revision="6ead3520e93a"/>
+	</package>
+
+    <package name="msgfplus" version="20130227">
+	     <repository toolshed="http://toolshed.g2.bx.psu.edu" name="protk_msgfplus" owner="iracooke" changeset_revision="528bcbb94199"/>
+    </package>
+
+
 </tool_dependency>
\ No newline at end of file