Mercurial > repos > iracooke > protk_msgfplus

changeset 6:87757d28e0d2

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Uploaded
author iracooke
date Mon, 04 Mar 2013 21:43:23 -0500
parents e3ed58461b7d
children a8ae51506967
files README repository_dependencies.xml tool_dependencies.xml
diffstat 3 files changed, 39 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README	Mon Mar 04 21:43:23 2013 -0500
@@ -0,0 +1,6 @@
+This package is an installer for the MSGF+ search tool.
+
+System Requirements. Ensure that you have the following packages installed on your system
+- unzip
+- java runtime 6 or higher
+
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/repository_dependencies.xml	Mon Mar 04 21:43:23 2013 -0500
@@ -0,0 +1,10 @@
+<?xml version="1.0"?>
+<!-- <repositories description="protk-msgfplus requires the protk rubygem to install MSGF+">
+     <repository toolshed="http://10.211.55.28:9009" name="galaxy_protk" owner="iracooke" changeset_revision="2562efef05cb"/>
+</repositories>
+ -->
+
+
+ <repositories description="Requires the protk rubygem to install MSGF+">
+     <repository toolshed="http://toolshed.g2.bx.psu.edu" name="galaxy_protk" owner="iracooke" changeset_revision="51f7c347c955"/>
+</repositories>
\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Mar 04 21:43:23 2013 -0500
@@ -0,0 +1,23 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="msgfplus" version="20130227">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">https://dl.dropbox.com/u/226794/galaxy_protk.tar.gz</action>
+                <action type="shell_command">sh install_msgfplus.sh $INSTALL_DIR 1.1.9</action>
+                <action type="move_file">
+                    <source>install_msgfplus.sh</source>
+                    <destination>$INSTALL_DIR</destination>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PROTK_MSGFPLUS_ROOT" action="set_to">$INSTALL_DIR</environment_variable>
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            Installs MSGF+ via the protk installer
+        </readme>
+    </package>
+
+</tool_dependency>
\ No newline at end of file