Mercurial > repos > iracooke > protk_proteogenomics

annotate test-data/small_combined.gff @ 0:28067ed4ea0e draft

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Docker support and update for protk 1.4
author iracooke
date Thu, 26 Mar 2015 20:11:34 -0400
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28067ed4ea0e Docker support and update for protk 1.4
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1 ##gff-version 3
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2 scaffold10 sixframe CDS 513537 514187 . + 0 ID=scaffold10_frame_3_orf_6477
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3 scaffold10 sixframe CDS 346373 347986 . - 0 ID=scaffold10_frame_6_orf_3129
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4 # start gene g447
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5 scaffold10 AUGUSTUS gene 195564 196835 0.75 + . ID=g447
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6 scaffold10 AUGUSTUS transcript 195564 196835 0.75 + . ID=g447.t1;Parent=g447
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7 scaffold10 AUGUSTUS start_codon 195564 195566 . + 0 Parent=g447.t1
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8 scaffold10 AUGUSTUS intron 195714 195776 0.93 + . Parent=g447.t1
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9 scaffold10 AUGUSTUS CDS 195564 195713 0.82 + 0 ID=g447.t1.cds;Parent=g447.t1
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10 scaffold10 AUGUSTUS CDS 195777 196835 0.92 + 0 ID=g447.t1.cds;Parent=g447.t1
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11 scaffold10 AUGUSTUS stop_codon 196833 196835 . + 0 Parent=g447.t1
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12 # coding sequence = [atggcggacaatagagattacgcgccagatactctggccgttcacgccgacgatgcgatgaactcatatacagatgtcg
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13 # cgcctgctttacacgtttctacaacctaccggtatgataattcaagactggtcccgatttcagatgaagagctagatcccctcaccgccctccctgta
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14 # tactcccgcctctcggccccaaacatctcgcgcctcgaacttatactgagctccctgacgaacggacaggcactgacttattcgtctggtttaagtgc
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15 # atttcatgccatgcttgtgtttttacgaccgaaagttatcgctatcagcgacggctaccacggatgtcatggtgttattgctatactggaaaaattat
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16 # acggattgaagaaggtcaacctctgggatgagaaggaatgggatactttcggtttcggcgaaggcgatgtggtacacgtcgaaactcctctcaatcct
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17 # accggcgaagccatcaatcttgaggttttcagggagaaagctaggaaaaggggcgcgtatctgacagttgattcgacgtttgggccgccggggttgca
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18 # ggatccgttcgtgcaaggggcagatgtggttatgcattctgggaccaagtattttggaggacatagtgatatgctttgtggtgtcttggttgttcgga
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19 # aagaaaagaaagaatggattagggggttgtggaatgagaggatgtatttagggagtgtaatggggaatatggagagttggcttggtgtgaggagtttg
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20 # aggacattggagttgagggtggcgaggcagagtaagaatgctgagagtattgtgaagtggcttgacgcttccttgcggggggagggggatgatgccgt
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21 # cgttgtacagaagacggttttgaagattcagcatgcgagtttgcagaaggatgatatggattggattaagacgcaaatgccgggtgggtttggaccgg
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22 # tgtttgtgatatggatgaagtcgatgcagttagcaagggctcttcccgggaagctgaagctatttcatcatgctacgagtcttggaggcgtggaaagt
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23 # ctgattgaatggaggaaaatgagcgatagcggtgtagatgtcagagtgttgagagtcagcataggtgtagagcactgggaagacctgagggccgactt
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24 # cttggaagggttcaaggctttggctctgtcggacgaagtaaatggagcataa]
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25 # protein sequence = [MADNRDYAPDTLAVHADDAMNSYTDVAPALHVSTTYRYDNSRLVPISDEELDPLTALPVYSRLSAPNISRLELILSSL
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26 # TNGQALTYSSGLSAFHAMLVFLRPKVIAISDGYHGCHGVIAILEKLYGLKKVNLWDEKEWDTFGFGEGDVVHVETPLNPTGEAINLEVFREKARKRGA
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27 # YLTVDSTFGPPGLQDPFVQGADVVMHSGTKYFGGHSDMLCGVLVVRKEKKEWIRGLWNERMYLGSVMGNMESWLGVRSLRTLELRVARQSKNAESIVK
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28 # WLDASLRGEGDDAVVVQKTVLKIQHASLQKDDMDWIKTQMPGGFGPVFVIWMKSMQLARALPGKLKLFHHATSLGGVESLIEWRKMSDSGVDVRVLRV
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29 # SIGVEHWEDLRADFLEGFKALALSDEVNGA]
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30 # end gene g447
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31 ###