Mercurial > repos > iracooke > protk_trans_proteomic_pipeline

view tool_dependencies.xml @ 0:a735edbe11ff

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author iracooke
date Mon, 04 Mar 2013 01:09:09 -0500
parents
children cedd5e884349
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
    <package name="trans_proteomic_pipeline" version="4.6.1">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://dl.dropbox.com/u/226794/galaxy_protk.tar.gz</action>
                <action type="shell_command">sh install_tpp.sh $INSTALL_DIR 1.1.9</action>
                <action type="move_file">
                    <source>install_tpp.sh</source>
                    <destination>$INSTALL_DIR</destination>
                </action>
                <action type="set_environment">
                    <environment_variable name="PROTK_TPP_ROOT" action="set_to">$INSTALL_DIR</environment_variable>
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>                
            </actions>
        </install>
        <readme>
            Compiling the TPP requires g++ subversion libbz2-dev swig expat libpng12-dev gnuplot libperl-dev libgd2-dev libgd2-xpm-dev libfuse-dev libcurl4-openssl-dev 

            The Trans Proteomic Pipeline is a collection of proteomics tools.  For more information see http://tools.proteomecenter.org/wiki/index.php?title=Software:TPP

            This package installs the TPP (Trans Proteomic Pipeline) using an installation script contained in protk. It requires the galaxy_protk package to be installed before it will work.
        </readme>
    </package>

</tool_dependency>