<?xml version="1.0"?>
<tool_dependency>
    <package name="galaxy_protk" version="1.2.2">
         <repository toolshed="http://toolshed.g2.bx.psu.edu" name="galaxy_protk" owner="iracooke" changeset_revision="c25df71f7b68" prior_installation_required="True"/>
    </package>
    <package name="trans_proteomic_pipeline" version="4.6.1">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://dl.dropbox.com/u/226794/galaxy_protk.tar.gz</action>
                <action type="shell_command">sh install_tpp.sh $INSTALL_DIR 1.2.2</action>
                <action type="move_file">
                    <source>install_tpp.sh</source>
                    <destination>$INSTALL_DIR</destination>
                </action>
                <action type="set_environment">
                    <environment_variable name="PROTK_TPP_ROOT" action="set_to">$INSTALL_DIR</environment_variable>
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>                
            </actions>
        </install>
        <readme>
            The Trans Proteomic Pipeline is a collection of proteomics tools.  For more information see http://tools.proteomecenter.org/wiki/index.php?title=Software:TPP

            This package installs the TPP (Trans Proteomic Pipeline) using an installation script contained in protk. It requires the galaxy_protk package to be installed before it will work.
        </readme>
    </package>

</tool_dependency>