Mercurial > repos > iracooke > tpp_prophets

diff peptide_prophet.xml @ 16:1b86e378de37 draft

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Fix tabular outputs. Export XML_ONLY variable
author iracooke
date Mon, 26 Oct 2015 20:40:34 -0400
parents 0746a2ae9e04
children 868e75fc0f70
line wrap: on
line diff
--- a/peptide_prophet.xml	Tue Oct 20 20:45:24 2015 -0400
+++ b/peptide_prophet.xml	Mon Oct 26 20:40:34 2015 -0400
@@ -6,6 +6,10 @@
         <requirement type="package" version="4.8.0">trans_proteomic_pipeline</requirement>
     </requirements>
     <command>
+        # This should be in the tpp_package.
+        # A hack for now
+            export XML_ONLY="true";
+
         peptide_prophet.rb
             --galaxy $input_file
             -o peptide_prophet_output.pep.xml