Mercurial > repos > iracooke > tpp_prophets

changeset 17:868e75fc0f70 draft default tip

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Export XML_ONLY variable
author iracooke
date Mon, 26 Oct 2015 22:04:43 -0400
parents 1b86e378de37
children
files peptide_prophet.xml
diffstat 1 files changed, 1 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/peptide_prophet.xml	Mon Oct 26 20:40:34 2015 -0400
+++ b/peptide_prophet.xml	Mon Oct 26 22:04:43 2015 -0400
@@ -6,10 +6,7 @@
         <requirement type="package" version="4.8.0">trans_proteomic_pipeline</requirement>
     </requirements>
     <command>
-        # This should be in the tpp_package.
-        # A hack for now
-            export XML_ONLY="true";
-
+        export XML_ONLY="true";
         peptide_prophet.rb
             --galaxy $input_file
             -o peptide_prophet_output.pep.xml