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1 <tool id="tandem_to_pepxml_1" name="Tandem to pepXML" version="1.0.1">
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2 <requirements>
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3 <requirement type="package" version="1.3.0">protk</requirement>
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4 <requirement type="package" version="4.6.3">trans_proteomic_pipeline</requirement>
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5 </requirements>
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6
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7 <description>Converts a tandem result file to pepXML</description>
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8
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9 <command>
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10 tandem_to_pepxml.rb $input_file -o $output
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11 </command>
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12
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13 <inputs>
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14 <param name="input_file" type="data" format="tandem" multiple="false" label="Input File" help="X!Tandem results file"/>
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15 </inputs>
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16
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17 <outputs>
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18 <data format="raw_pepxml" metadata_source="input_file" name="output" label="${input_file.display_name}.pepXML" />
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19 </outputs>
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20
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21 <help>
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22 Convert X!Tandem results to pepXML
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23 </help>
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24
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25 </tool>
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