comparison tandem_to_pepxml.xml @ 10:ffd1d25b8080 draft

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author iracooke
date Mon, 16 Jun 2014 05:47:38 -0400
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children 9d6e0ad4d600
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9:50eb60757ca5 10:ffd1d25b8080
1 <tool id="tandem_to_pepxml_1" name="Tandem to pepXML" version="1.0.1">
2 <requirements>
3 <requirement type="package" version="1.3.0">protk</requirement>
4 <requirement type="package" version="4.6.3">trans_proteomic_pipeline</requirement>
5 </requirements>
6
7 <description>Converts a tandem result file to pepXML</description>
8
9 <command>
10 tandem_to_pepxml.rb $input_file -o $output
11 </command>
12
13 <inputs>
14 <param name="input_file" type="data" format="tandem" multiple="false" label="Input File" help="X!Tandem results file"/>
15 </inputs>
16
17 <outputs>
18 <data format="raw_pepxml" metadata_source="input_file" name="output" label="${input_file.display_name}.pepXML" />
19 </outputs>
20
21 <help>
22 Convert X!Tandem results to pepXML
23 </help>
24
25 </tool>