Mercurial > repos > iracooke > xtandem
comparison tandem_to_pepxml.xml @ 10:ffd1d25b8080 draft
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| author | iracooke |
|---|---|
| date | Mon, 16 Jun 2014 05:47:38 -0400 |
| parents | |
| children | 9d6e0ad4d600 |
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| 9:50eb60757ca5 | 10:ffd1d25b8080 |
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| 1 <tool id="tandem_to_pepxml_1" name="Tandem to pepXML" version="1.0.1"> | |
| 2 <requirements> | |
| 3 <requirement type="package" version="1.3.0">protk</requirement> | |
| 4 <requirement type="package" version="4.6.3">trans_proteomic_pipeline</requirement> | |
| 5 </requirements> | |
| 6 | |
| 7 <description>Converts a tandem result file to pepXML</description> | |
| 8 | |
| 9 <command> | |
| 10 tandem_to_pepxml.rb $input_file -o $output | |
| 11 </command> | |
| 12 | |
| 13 <inputs> | |
| 14 <param name="input_file" type="data" format="tandem" multiple="false" label="Input File" help="X!Tandem results file"/> | |
| 15 </inputs> | |
| 16 | |
| 17 <outputs> | |
| 18 <data format="raw_pepxml" metadata_source="input_file" name="output" label="${input_file.display_name}.pepXML" /> | |
| 19 </outputs> | |
| 20 | |
| 21 <help> | |
| 22 Convert X!Tandem results to pepXML | |
| 23 </help> | |
| 24 | |
| 25 </tool> |