<tool id="tandem_to_pepxml_1" name="Tandem to pepXML" version="1.0.1">
	<requirements>
	    <requirement type="package" version="1.3.0">protk</requirement>
	    <requirement type="package" version="4.6.3">trans_proteomic_pipeline</requirement>
   </requirements>

  <description>Converts a tandem result file to pepXML</description>

<command>
	tandem_to_pepxml.rb $input_file -o $output 
</command>

<inputs>
	<param name="input_file" type="data" format="tandem" multiple="false" label="Input File" help="X!Tandem results file"/>
</inputs>

<outputs>
	<data format="raw_pepxml" metadata_source="input_file" name="output" label="${input_file.display_name}.pepXML" />
</outputs>

<help>
	Convert X!Tandem results to pepXML
</help>

</tool>