Mercurial > repos > iracooke > xtandem
changeset 18:bbef168551fe draft default tip
planemo upload for repository https://github.com/iracooke/protk-galaxytools/tree/master/xtandem commit aa789ac01391258aff7a819ebf64a7cbc46730c9
| author | galaxy-australia |
|---|---|
| date | Wed, 18 May 2022 23:50:58 +0000 |
| parents | 29e2df3edf11 |
| children | |
| files | tandem.xml tool_dependencies.xml |
| diffstat | 2 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/tandem.xml Tue Oct 27 01:45:26 2015 -0400 +++ b/tandem.xml Wed May 18 23:50:58 2022 +0000 @@ -164,7 +164,7 @@ <param name="allow_multi_isotope_search" type="boolean" label="Allow multi-isotope search" help="This allows peptide candidates in windows around -1 Da and -2 Da from the acquired mass to be considered. Only applicable when the minus/plus window above is set to less than 0.5 Da. Good for accurate-mass instruments for which the reported precursor mass is not corrected to the monoisotopic mass." truevalue="--multi-isotope-search" falsevalue=""/> </inputs> <outputs> - <data format="tandem" name="output" metadata_source="input_file" label="X!Tandem_vs_${database.dbkey if $database.has_key('dbkey') else $database.fasta_file.display_name}.${input_file.display_name}.${input_file.display_name}.tandem"/> + <data format="tandem" name="output" metadata_source="input_file" label="X!Tandem_vs_${database.fasta_file.display_name}.${input_file.display_name}.${input_file.display_name}.tandem"/> </outputs> <tests> <!-- Just test that the tool runs and produces vaguely correct output -->
--- a/tool_dependencies.xml Tue Oct 27 01:45:26 2015 -0400 +++ b/tool_dependencies.xml Wed May 18 23:50:58 2022 +0000 @@ -1,9 +1,9 @@ -<?xml version="1.0"?> +<?xml version="1.0" ?> <tool_dependency> <package name="protk" version="1.4.3"> - <repository changeset_revision="991797b02976" name="package_protk_1_4_3" owner="iracooke" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository name="package_protk_1_4_3" owner="iracooke" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="991797b02976"/> </package> <package name="trans_proteomic_pipeline" version="4.8.0"> - <repository changeset_revision="a7273394d858" name="package_tpp_4_8_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository name="package_tpp_4_8_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a7273394d858"/> </package> -</tool_dependency> +</tool_dependency> \ No newline at end of file