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annotate abricate_list.xml @ 4:78c75f134c16 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit 1127a471ad5d1a75c311fa3be581476f5d8f9339
author iuc
date Mon, 19 Mar 2018 10:42:19 -0400
parents 6e9aea89e388
children c2ef298da409
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78c75f134c16 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit 1127a471ad5d1a75c311fa3be581476f5d8f9339
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1 <tool id="abricate_list" name="ABRicate List" version="@VERSION@">
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2 <description>
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3 List all of abricate's available databases.
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4 </description>
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5 <macros>
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6 <import>macros.xml</import>
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7 </macros>
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8 <expand macro="requirements" />
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9 <expand macro="version_command" />
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11 <command detect_errors="exit_code"><![CDATA[
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12 abricate --list > '$report'
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13 ]]></command>
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14
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15 <inputs>
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16 </inputs>
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18 <outputs>
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19 <data name="report" format="txt" label="${tool.name} - list of databases"/>
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20 </outputs>
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21
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22 <tests>
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23 <test>
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24 <output name="report" ftype="txt" file="output_list.txt" compare="contains" />
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25 </test>
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26 </tests>
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27
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28 <help><![CDATA[
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29 **What it does**
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30
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31 ABRicate List will list all the antibiotic databases used by ABRicate. The database of these genes is built from ResFinder.
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32 ]]></help>
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33
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34 <expand macro="citations"/>
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35 </tool>