diff abricate_list.xml @ 1:15197951a756 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit 626b990b38e0585abfb6a06a2516ff498dc2257b
author iuc
date Fri, 03 Mar 2017 14:56:09 -0500
parents 862f5a86854d
children 2aa02d2a6af3
line wrap: on
line diff
--- a/abricate_list.xml	Tue Nov 29 14:52:34 2016 -0500
+++ b/abricate_list.xml	Fri Mar 03 14:56:09 2017 -0500
@@ -1,22 +1,19 @@
-<tool id="abricate_list" name="ABRicate List" version="0.1.0">
+<tool id="abricate_list" name="ABRicate List" version="0.3">
     <requirements>
         <requirement type="package" version="0.3">abricate</requirement>
-        <requirement type="package" version="5.18.1">perl</requirement>
-        <requirement type="package" version="2.2.31">blast+</requirement>
     </requirements>
 
     <version_command>abricate --version</version_command>
 
     <command detect_errors="exit_code"><![CDATA[
-        abricate --list 2> "$report"
+        abricate --list 2> '$report'
     ]]></command>
 
     <inputs>
-
     </inputs>
 
     <outputs>
-        <data format="txt" name="report" label="${tool.name} - list of databases"/>
+        <data name="report" format="txt" label="${tool.name} - list of databases"/>
     </outputs>
 
     <tests>
@@ -29,16 +26,16 @@
 **What it does**
 
 ABRicate List will list all the antibiotic databases used by ABRicate. The database of these genes is built from ResFinder.
-
     ]]></help>
 
     <citations>
-      <citation type="bibtex">
-        @UNPUBLISHED{Seemann2016,
-        author = "Seemann T",
-        title = "ABRicate: mass screening of contigs for antiobiotic resistance genes",
-        year = "2016",
-        note = "https://github.com/tseemann/abricate"}
-      </citation>
+        <citation type="bibtex">
+@UNPUBLISHED{Seemann2016,
+    author = {Seemann, Torsten},
+    title = {ABRicate: mass screening of contigs for antiobiotic resistance genes},
+    year = {2016},
+    url = {https://github.com/tseemann/abricate},
+}
+        </citation>
     </citations>
 </tool>