comparison test-data/test.gbk @ 2:2aa02d2a6af3 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit 0ccab47582f8bc88f9ebc836c4c70d4ce495960c
author iuc
date Tue, 18 Jul 2017 13:56:16 -0400
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1:15197951a756 2:2aa02d2a6af3
1 LOCUS STANORAX 1601 bp DNA linear BCT 27-MAY-1993
2 DEFINITION Staphylococcus aureus fluoroquinolone resistance protein (norA)
3 gene, complete cds.
4 ACCESSION M97169
5 VERSION M97169.1
6 KEYWORDS fluoroquinolone resistance protein; norA gene.
7 SOURCE Staphylococcus aureus
8 ORGANISM Staphylococcus aureus
9 Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae;
10 Staphylococcus.
11 REFERENCE 1 (bases 1 to 1601)
12 AUTHORS Kaatz,G.W., Seo,S.M. and Ruble,C.A.
13 TITLE Efflux-mediated fluoroquinolone resistance in Staphylococcus aureus
14 JOURNAL Antimicrob. Agents Chemother. 37 (5), 1086-1094 (1993)
15 PUBMED 8517696
16 FEATURES Location/Qualifiers
17 source 1..1601
18 /organism="Staphylococcus aureus"
19 /mol_type="genomic DNA"
20 /db_xref="taxon:1280"
21 gene 117..1412
22 /gene="norA"
23 regulatory 117..122
24 /regulatory_class="minus_35_signal"
25 /gene="norA"
26 /note="putative"
27 regulatory 141..146
28 /regulatory_class="minus_10_signal"
29 /gene="norA"
30 CDS 246..1412
31 /gene="norA"
32 /function="fluoroquinolone efflux"
33 /standard_name="NORA1199 wild-type gene"
34 /codon_start=1
35 /transl_table=11
36 /protein_id="AAA26658.1"
37 /translation="MNKQILVLYFNIFLIFLGIGLVIPVLPVYLKDLGLTGSDLGLLV
38 AAFALSQMIISPFGGTLADKLGKKLIICIGLILFSVSEFMFAIGQNFLILMLSRVIGG
39 MSAGMVMPGVTGLIADISPSHQKAKNFGYMSAIINSGFILGPGIGGFMAEVSHRMPFY
40 FAGALGILAFIMSIVLIHDPKKVSTNGFQKLEPQLLTKINWKVFITPVILTLVLSFGL
41 SAFETLYSLYTADKVNYSPKDISIAITGGGIFGALFQIYFFDKFMKYFSELTFIAWSL
42 IYSVIVLVLLVIADGYWTIMVISFVVFIGFDMIRPAITNYFSNIAGDRQGFAGGLNST
43 FTSMGNFIGPLIAGALFDVHIEAPIYMAIGVSLAGVVIVLIEKQHRAKLKQQDL"
44 ORIGIN
45 1 ctagtagtat agtatgatta cttttttgca atttcatatg atcaatcccc tttattttaa
46 61 tatgtcatta attatacaat taaatggaaa atagtgataa ttacaaagaa aaaatattgt
47 121 caaatgtagc aatattgtaa tacaatatag aaacttttta cgaatattta gcatgaattg
48 181 caatctgtcg tggaaaagaa aaataacagc ttgaagagtg acaagtagaa aaaagaggtg
49 241 agcaaatgaa taaacagatt ttggtattat attttaatat tttcttaatt tttttaggta
50 301 tcggtctagt gataccagtc ttacctgttt atttaaaaga tttggggtta actggtagtg
51 361 atttaggatt attagttgct gctttcgcct tatctcaaat gattatatcg ccattcggtg
52 421 gtacgttagc tgataaatta ggaaagaaat taattatatg tataggatta attttgtttt
53 481 cagtgtcaga atttatgttt gctatcggtc agaatttttt aattttgatg ttatcaaggg
54 541 ttatcggtgg tatgagtgct ggtatggtta tgcctggggt gacaggttta atagctgata
55 601 tttcaccaag ccatcaaaaa gcaaaaaact ttggctacat gtcagcgatt atcaattcag
56 661 gattcatttt aggaccaggg attggtggat ttatggcaga agtttcacat cgtatgccat
57 721 tttattttgc aggtgcatta ggtattctag catttataat gtcaattgta ttgattcacg
58 781 accctaaaaa agtttcgaca aatggattcc aaaagttgga gccacaattg ctaacgaaaa
59 841 ttaactggaa agtgtttatt acaccagtta ttctaacact tgtattatcg tttggtttat
60 901 ctgcatttga aacattgtat tcactataca cagctgacaa ggtaaattat tcacctaaag
61 961 atatttcgat tgcaattaca ggtggcggta tctttggtgc acttttccaa atttatttct
62 1021 ttgataaatt tatgaaatac ttctctgagt taacatttat tgcatggtca ttaatatatt
63 1081 cagttattgt attagtgcta ttagttattg ccgatggtta ctggacaatt atggtaataa
64 1141 gctttgttgt ctttatcggg ttcgatatga taagacctgc tattacaaat tatttttcaa
65 1201 atattgctgg tgatagacag ggatttgcag gtgggttaaa ctcaacattc actagcatgg
66 1261 ggaattttat aggtccttta atcgcaggtg cgttatttga tgtgcacatt gaagccccaa
67 1321 tttatatggc tataggtgtg tcattagctg gtgttgtcat tgttttaatt gaaaagcaac
68 1381 atagagctaa gttaaaacaa caagatttgt aatatcgcac atggttgtca ttcgattaat
69 1441 gtttttcgac aactaaagca tttcaaaata agcatcgatt ttcttacaat tatagtgaag
70 1501 aaaagtcgat gctttaaatt tataaagatt aaaaactttt aaatgtttta gtctttatat
71 1561 ttaaatgtta tatgtaacaa aaaatgattt tgagtaataa a
72 //