Mercurial > repos > iuc > abricate
comparison test-data/test.gbk @ 2:2aa02d2a6af3 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit 0ccab47582f8bc88f9ebc836c4c70d4ce495960c
author | iuc |
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date | Tue, 18 Jul 2017 13:56:16 -0400 |
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1:15197951a756 | 2:2aa02d2a6af3 |
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1 LOCUS STANORAX 1601 bp DNA linear BCT 27-MAY-1993 | |
2 DEFINITION Staphylococcus aureus fluoroquinolone resistance protein (norA) | |
3 gene, complete cds. | |
4 ACCESSION M97169 | |
5 VERSION M97169.1 | |
6 KEYWORDS fluoroquinolone resistance protein; norA gene. | |
7 SOURCE Staphylococcus aureus | |
8 ORGANISM Staphylococcus aureus | |
9 Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; | |
10 Staphylococcus. | |
11 REFERENCE 1 (bases 1 to 1601) | |
12 AUTHORS Kaatz,G.W., Seo,S.M. and Ruble,C.A. | |
13 TITLE Efflux-mediated fluoroquinolone resistance in Staphylococcus aureus | |
14 JOURNAL Antimicrob. Agents Chemother. 37 (5), 1086-1094 (1993) | |
15 PUBMED 8517696 | |
16 FEATURES Location/Qualifiers | |
17 source 1..1601 | |
18 /organism="Staphylococcus aureus" | |
19 /mol_type="genomic DNA" | |
20 /db_xref="taxon:1280" | |
21 gene 117..1412 | |
22 /gene="norA" | |
23 regulatory 117..122 | |
24 /regulatory_class="minus_35_signal" | |
25 /gene="norA" | |
26 /note="putative" | |
27 regulatory 141..146 | |
28 /regulatory_class="minus_10_signal" | |
29 /gene="norA" | |
30 CDS 246..1412 | |
31 /gene="norA" | |
32 /function="fluoroquinolone efflux" | |
33 /standard_name="NORA1199 wild-type gene" | |
34 /codon_start=1 | |
35 /transl_table=11 | |
36 /protein_id="AAA26658.1" | |
37 /translation="MNKQILVLYFNIFLIFLGIGLVIPVLPVYLKDLGLTGSDLGLLV | |
38 AAFALSQMIISPFGGTLADKLGKKLIICIGLILFSVSEFMFAIGQNFLILMLSRVIGG | |
39 MSAGMVMPGVTGLIADISPSHQKAKNFGYMSAIINSGFILGPGIGGFMAEVSHRMPFY | |
40 FAGALGILAFIMSIVLIHDPKKVSTNGFQKLEPQLLTKINWKVFITPVILTLVLSFGL | |
41 SAFETLYSLYTADKVNYSPKDISIAITGGGIFGALFQIYFFDKFMKYFSELTFIAWSL | |
42 IYSVIVLVLLVIADGYWTIMVISFVVFIGFDMIRPAITNYFSNIAGDRQGFAGGLNST | |
43 FTSMGNFIGPLIAGALFDVHIEAPIYMAIGVSLAGVVIVLIEKQHRAKLKQQDL" | |
44 ORIGIN | |
45 1 ctagtagtat agtatgatta cttttttgca atttcatatg atcaatcccc tttattttaa | |
46 61 tatgtcatta attatacaat taaatggaaa atagtgataa ttacaaagaa aaaatattgt | |
47 121 caaatgtagc aatattgtaa tacaatatag aaacttttta cgaatattta gcatgaattg | |
48 181 caatctgtcg tggaaaagaa aaataacagc ttgaagagtg acaagtagaa aaaagaggtg | |
49 241 agcaaatgaa taaacagatt ttggtattat attttaatat tttcttaatt tttttaggta | |
50 301 tcggtctagt gataccagtc ttacctgttt atttaaaaga tttggggtta actggtagtg | |
51 361 atttaggatt attagttgct gctttcgcct tatctcaaat gattatatcg ccattcggtg | |
52 421 gtacgttagc tgataaatta ggaaagaaat taattatatg tataggatta attttgtttt | |
53 481 cagtgtcaga atttatgttt gctatcggtc agaatttttt aattttgatg ttatcaaggg | |
54 541 ttatcggtgg tatgagtgct ggtatggtta tgcctggggt gacaggttta atagctgata | |
55 601 tttcaccaag ccatcaaaaa gcaaaaaact ttggctacat gtcagcgatt atcaattcag | |
56 661 gattcatttt aggaccaggg attggtggat ttatggcaga agtttcacat cgtatgccat | |
57 721 tttattttgc aggtgcatta ggtattctag catttataat gtcaattgta ttgattcacg | |
58 781 accctaaaaa agtttcgaca aatggattcc aaaagttgga gccacaattg ctaacgaaaa | |
59 841 ttaactggaa agtgtttatt acaccagtta ttctaacact tgtattatcg tttggtttat | |
60 901 ctgcatttga aacattgtat tcactataca cagctgacaa ggtaaattat tcacctaaag | |
61 961 atatttcgat tgcaattaca ggtggcggta tctttggtgc acttttccaa atttatttct | |
62 1021 ttgataaatt tatgaaatac ttctctgagt taacatttat tgcatggtca ttaatatatt | |
63 1081 cagttattgt attagtgcta ttagttattg ccgatggtta ctggacaatt atggtaataa | |
64 1141 gctttgttgt ctttatcggg ttcgatatga taagacctgc tattacaaat tatttttcaa | |
65 1201 atattgctgg tgatagacag ggatttgcag gtgggttaaa ctcaacattc actagcatgg | |
66 1261 ggaattttat aggtccttta atcgcaggtg cgttatttga tgtgcacatt gaagccccaa | |
67 1321 tttatatggc tataggtgtg tcattagctg gtgttgtcat tgttttaatt gaaaagcaac | |
68 1381 atagagctaa gttaaaacaa caagatttgt aatatcgcac atggttgtca ttcgattaat | |
69 1441 gtttttcgac aactaaagca tttcaaaata agcatcgatt ttcttacaat tatagtgaag | |
70 1501 aaaagtcgat gctttaaatt tataaagatt aaaaactttt aaatgtttta gtctttatat | |
71 1561 ttaaatgtta tatgtaacaa aaaatgattt tgagtaataa a | |
72 // |