Mercurial > repos > iuc > abricate
diff abricate_list.xml @ 1:15197951a756 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit 626b990b38e0585abfb6a06a2516ff498dc2257b
author | iuc |
---|---|
date | Fri, 03 Mar 2017 14:56:09 -0500 |
parents | 862f5a86854d |
children | 2aa02d2a6af3 |
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--- a/abricate_list.xml Tue Nov 29 14:52:34 2016 -0500 +++ b/abricate_list.xml Fri Mar 03 14:56:09 2017 -0500 @@ -1,22 +1,19 @@ -<tool id="abricate_list" name="ABRicate List" version="0.1.0"> +<tool id="abricate_list" name="ABRicate List" version="0.3"> <requirements> <requirement type="package" version="0.3">abricate</requirement> - <requirement type="package" version="5.18.1">perl</requirement> - <requirement type="package" version="2.2.31">blast+</requirement> </requirements> <version_command>abricate --version</version_command> <command detect_errors="exit_code"><![CDATA[ - abricate --list 2> "$report" + abricate --list 2> '$report' ]]></command> <inputs> - </inputs> <outputs> - <data format="txt" name="report" label="${tool.name} - list of databases"/> + <data name="report" format="txt" label="${tool.name} - list of databases"/> </outputs> <tests> @@ -29,16 +26,16 @@ **What it does** ABRicate List will list all the antibiotic databases used by ABRicate. The database of these genes is built from ResFinder. - ]]></help> <citations> - <citation type="bibtex"> - @UNPUBLISHED{Seemann2016, - author = "Seemann T", - title = "ABRicate: mass screening of contigs for antiobiotic resistance genes", - year = "2016", - note = "https://github.com/tseemann/abricate"} - </citation> + <citation type="bibtex"> +@UNPUBLISHED{Seemann2016, + author = {Seemann, Torsten}, + title = {ABRicate: mass screening of contigs for antiobiotic resistance genes}, + year = {2016}, + url = {https://github.com/tseemann/abricate}, +} + </citation> </citations> </tool>