Mercurial > repos > iuc > abricate
diff test-data/output_mincov100.txt @ 8:b734db305578 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/ commit fc114fbebd3b866c33d2ad95b028cb719651689a"
| author | iuc |
|---|---|
| date | Wed, 22 Apr 2020 18:44:06 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/output_mincov100.txt Wed Apr 22 18:44:06 2020 -0400 @@ -0,0 +1,8 @@ +#FILE SEQUENCE START END STRAND GENE COVERAGE COVERAGE_MAP GAPS %COVERAGE %IDENTITY DATABASE ACCESSION PRODUCT RESISTANCE +MRSA0252.fna gi|49482253|ref|NC_002952.2| 40786 41556 - aadD_1 1-771/771 =============== 0/0 100.00 99.74 resfinder AF181950 aadD Amikacin;Tobramycin +MRSA0252.fna gi|49482253|ref|NC_002952.2| 44919 46925 - mecA_6 1-2007/2007 =============== 0/0 100.00 100.00 resfinder BX571856 mecA Amoxicillin;Amoxicillin+Clavulanic_acid;Ampicillin;Ampicillin+Clavulanic_acid;Cefepime;Cefixime;Cefotaxime;Cefoxitin;Ceftazidime;Ertapenem;Imipenem;Meropenem;Piperacillin;Piperacillin+Tazobactam +MRSA0252.fna gi|49482253|ref|NC_002952.2| 55890 56621 + erm(A)_1 1-732/732 =============== 0/0 100.00 100.00 resfinder X03216 erm(A) Erythromycin;Lincomycin;Clindamycin;Quinupristin;Pristinamycin_IA;Virginiamycin_S +MRSA0252.fna gi|49482253|ref|NC_002952.2| 56747 57529 - ant(9)-Ia_1 1-783/783 =============== 0/0 100.00 100.00 resfinder X02588 ant(9)-Ia +MRSA0252.fna gi|49482253|ref|NC_002952.2| 1796513 1797244 + erm(A)_1 1-732/732 =============== 0/0 100.00 100.00 resfinder X03216 erm(A) Erythromycin;Lincomycin;Clindamycin;Quinupristin;Pristinamycin_IA;Virginiamycin_S +MRSA0252.fna gi|49482253|ref|NC_002952.2| 1797370 1798152 - ant(9)-Ia_1 1-783/783 =============== 0/0 100.00 100.00 resfinder X02588 ant(9)-Ia +MRSA0252.fna gi|49482253|ref|NC_002952.2| 1913785 1914672 + blaZ_78 1-888/888 =============== 0/0 100.00 99.66 resfinder KU607301 blaZ Amoxicillin;Ampicillin;Penicillin;Piperacillin