Mercurial > repos > iuc > anndata_import
changeset 11:fb9e030ffae4 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/anndata/ commit 7decaee045e15bd71deb3bc46b81aa39caf1ed31
| author | iuc |
|---|---|
| date | Wed, 22 Jun 2022 07:21:48 +0000 |
| parents | 55e35e9203cf |
| children | 93dd15e13e6a |
| files | import.xml loompy_to_tsv.py macros.xml |
| diffstat | 3 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/import.xml Sat May 07 19:54:26 2022 +0000 +++ b/import.xml Wed Jun 22 07:21:48 2022 +0000 @@ -1,4 +1,4 @@ -<tool id="anndata_import" name="Import Anndata and loom" version="@VERSION@+@GALAXY_VERSION@" profile="20.09"> +<tool id="anndata_import" name="Import Anndata and loom" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.09"> <description>from different format</description> <macros> <import>macros.xml</import>
--- a/loompy_to_tsv.py Sat May 07 19:54:26 2022 +0000 +++ b/loompy_to_tsv.py Wed Jun 22 07:21:48 2022 +0000 @@ -20,7 +20,7 @@ allrows = [] # Build background info for all attributes and layers -loompyfile = loompy.connect(file) +loompyfile = loompy.connect(file, mode="r") row_attributes = loompyfile.ra.keys() # List of row attributes for row in row_attributes: # Each list represents rownames for row_attributes c_row = loompyfile.ra[row]
--- a/macros.xml Sat May 07 19:54:26 2022 +0000 +++ b/macros.xml Wed Jun 22 07:21:48 2022 +0000 @@ -1,9 +1,9 @@ <macros> - <token name="@VERSION@">0.7.5</token> - <token name="@GALAXY_VERSION@">galaxy0</token> + <token name="@TOOL_VERSION@">0.7.5</token> + <token name="@VERSION_SUFFIX@">1</token> <xml name="requirements"> <requirements> - <requirement type="package" version="@VERSION@">anndata</requirement> + <requirement type="package" version="@TOOL_VERSION@">anndata</requirement> <requirement type="package" version="2.0.17">loompy</requirement> <yield /> </requirements>