Mercurial > repos > iuc > argnorm
changeset 0:bae2bc0f1b66 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/argnorm commit cc4c7a0c31ae4bed0c1f0955f3aa72ccdec3b132
| author | iuc |
|---|---|
| date | Wed, 28 Aug 2024 20:27:17 +0000 |
| parents | |
| children | |
| files | argnorm.xml test-data/blastout.filtered.argnorm.tsv test-data/blastout.filtered.txt test-data/deeparg_hamronize.tsv test-data/deeparg_hamronize_argnorm_results.tsv test-data/groot-resfinder-results.tsv test-data/resfinder_PSM7J199_R2.report |
| diffstat | 7 files changed, 541 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/argnorm.xml Wed Aug 28 20:27:17 2024 +0000 @@ -0,0 +1,83 @@ +<tool id="argnorm" name="argNorm" version="@VERSION@+galaxy0" profile="22.05"> + <description>a tool to normalize antibiotic resistance genes (ARGs) by mapping them to the antibiotic resistance ontology (ARO)</description> + <macros> + <token name="@VERSION@">0.6.0</token> + </macros> + <xrefs> + <xref type="bio.tools">argnorm</xref> + </xrefs> + <requirements> + <requirement type="package" version="@VERSION@">argnorm</requirement> + </requirements> + <command detect_errors="exit_code"><![CDATA[ + argnorm + '$tool' + --db '$db' + -i '$input' + -o '$output' + $hamronized + ]]></command> + <inputs> + <param type="data" name="input" format="tsv,txt" label="Specify input file" help="-i" /> + <param type="select" name="tool" label="The tool you used to do ARG annotation" help="[tool]" > + <option value="deeparg" selected="true">DeepARG</option> + <option value="argsoap">ARGs_OAP</option> + <option value="abricate">ABRicate</option> + <option value="resfinder">ResFinder</option> + <option value="amrfinderplus">AMRFinderPlus</option> + <option value="groot">Groot</option> + </param> + <param type="select" argument="--db" label="The database you used to do ARG annotation"> + <option value="sarg" selected="true">SARG</option> + <option value="ncbi">NCBI</option> + <option value="resfinder">ResFinder</option> + <option value="deeparg" selected="true">DeepARG</option> + <option value="amrfinderplus">AMRFinderPlus</option> + <option value="megares">MEGARes</option> + <option value="argannot">ARG-ANNOT</option> + <option value="groot-resfinder">Groot ResFinder database </option> + <option value="groot-argannot">Groot ARG-ANNOT database </option> + <option value="groot-card">Groot CARD database </option> + <option value="groot-db">Groot DB (combining all sequences in ResFinder, ARG-annot and CARD)</option> + <option value="groot-core-db">Groot Core DB (combining sequences that are present in each of ResFinder, ARG-annot and CARD databases)</option> + </param> + <param name="hamronized" type="boolean" label="If the input is hamronized" truevalue="--hamronized" falsevalue="" optional="true" help="Use this if the input is hamronized (processed using the hAMRonization tool)" /> + </inputs> + <outputs> + <data name="output" format="tsv" label="${tool.name} on ${on_string} : ARG normalized table" /> + </outputs> + <tests> + <!-- Test 1 : input : tsv, output : tsv, tool : groot --> + <test> + <param name="input" value="resfinder_PSM7J199_R2.report"/> + <param name="tool" value="groot"/> + <param name="db" value="groot-resfinder"/> + <output name="output" file="groot-resfinder-results.tsv"/> + </test> + <!-- Test 2 : input : txt, output : tsv, tool : argsoap --> + <test> + <param name="input" value="blastout.filtered.txt"/> + <param name="tool" value="argsoap"/> + <param name="db" value="sarg"/> + <output name="output" file="blastout.filtered.argnorm.tsv"/> + </test> + <!-- Test 3 : input : tsv, output : tsv, tool : deeparg, hamronize : true --> + <test> + <param name="input" value="deeparg_hamronize.tsv"/> + <param name="tool" value="deeparg"/> + <param name="db" value="deeparg"/> + <param name="hamronized" value="true"/> + <output name="output" file="deeparg_hamronize_argnorm_results.tsv"/> + </test> + </tests> + <help><![CDATA[ + +argNorm is a tool to normalize antibiotic resistance genes (ARGs) by mapping them to the antibiotic resistance ontology (ARO) created by the CARD database. + +argNorm also enhances antibiotic resistance gene annotations by providing drug categorization of the drugs that antibiotic resistance genes confer resistance to. + + ]]></help> + <citations> + <citation type="doi">https://github.com/BigDataBiology/argNorm</citation> + </citations> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/blastout.filtered.argnorm.tsv Wed Aug 28 20:27:17 2024 +0000 @@ -0,0 +1,101 @@ +0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 ARO confers_resistance_to resistance_to_drug_classes +qseqid sseqid pident length qlen slen evalue bitscore qcov sample scov gene subtype type count copy rpk rpksum +HSM7J4M8@HSM7J4M8_R1@10007@CAVL1ANXX170419:8:1312:3147:65962/1 gi|751930065|ref|WP_041144773.1| 84.848 33 101 648 6.19e-12 55.5 0.32673267326732675 HSM7J4M8 0.05092592592592592 gi|751930065|ref|WP_041144773.1| macrolide-lincosamide-streptogramin__macB macrolide-lincosamide-streptogramin 0.3333333333333333 0.016975308641975308 0.51440329218107 28361.83513176316 ARO:3000535 +HSM7J4M8@HSM7J4M8_R1@10017@CAVL1ANXX170419:8:1312:6960:13504/1 gb|ADP36409.1|ARO:3003730|Bifidobacteria 100.0 33 101 1107 9.96e-19 74.7 0.32673267326732675 HSM7J4M8 0.02981029810298103 gb|ADP36409.1|ARO:3003730|Bifidobacteria mupirocin__Bifidobacteria intrinsic ileS conferring resistance to mupirocin mupirocin 1.0 0.02981029810298103 0.903342366757001 28361.83513176316 ARO:3003730 ARO:3000554 ARO:3007151 +HSM7J4M8@HSM7J4M8_R1@10018@CAVL1ANXX170419:8:1312:7015:67833/1 gi|490355791|ref|WP_004235564.1| 87.5 32 101 510 4.28e-13 58.9 0.31683168316831684 HSM7J4M8 0.06274509803921569 gi|490355791|ref|WP_004235564.1| multidrug__emrB multidrug 0.3333333333333333 0.02091503267973856 0.65359477124183 28361.83513176316 ARO:3004597 ARO:0000032 ARO:3000007 +HSM7J4M8@HSM7J4M8_R1@10019@CAVL1ANXX170419:8:1312:7329:85173/1 gb|AAF74725.1|ARO:3004659|Mef(En2) 100.0 33 101 401 1.8e-16 68.2 0.32673267326732675 HSM7J4M8 0.08229426433915212 gb|AAF74725.1|ARO:3004659|Mef(En2) macrolide-lincosamide-streptogramin__mef(En2) macrolide-lincosamide-streptogramin 1.0 0.08229426433915212 2.4937655860349124 28361.83513176316 ARO:3004659 ARO:0000046 ARO:0000017 +HSM7J4M8@HSM7J4M8_R1@10023@CAVL1ANXX170419:8:1312:8170:40475/1 ZP_04557016 100.0 33 101 657 2.5e-16 67.8 0.32673267326732675 HSM7J4M8 0.0502283105022831 ZP_04557016 tetracycline__tet(Q) tetracycline 1.0 0.0502283105022831 1.5220700152207 28361.83513176316 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10028@CAVL1ANXX170419:8:1312:8966:29123/1 ZP_04557016 96.97 33 101 657 1.36e-17 71.6 0.32673267326732675 HSM7J4M8 0.0502283105022831 ZP_04557016 tetracycline__tet(Q) tetracycline 1.0 0.0502283105022831 1.5220700152207 28361.83513176316 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@1002@CAVL1ANXX170419:7:1115:3411:87969/1 gb|AEY83581|ARO:3000510|mupB 84.848 33 101 1033 6.34e-16 66.6 0.32673267326732675 HSM7J4M8 0.031945788964181994 gb|AEY83581|ARO:3000510|mupB mupirocin__mupB mupirocin 1.0 0.031945788964181994 0.9680542110358181 28361.83513176316 ARO:3000510 ARO:3000554 ARO:3007151 +HSM7J4M8@HSM7J4M8_R1@10033@CAVL1ANXX170419:8:1312:9879:14531/1 gi|511019447|ref|WP_016273783.1| 100.0 33 101 296 2.91e-18 72.8 0.32673267326732675 HSM7J4M8 0.11148648648648649 gi|511019447|ref|WP_016273783.1| beta_lactam__CblA-1 beta_lactam 1.0 0.11148648648648649 3.3783783783783785 28361.83513176316 ARO:3002999 ARO:0000032,ARO:3004129 ARO:3000007,ARO:3000007 +HSM7J4M8@HSM7J4M8_R1@10034@CAVL1ANXX170419:8:1312:9988:52653/1 ACI02041 100.0 33 101 639 3.53e-17 70.5 0.32673267326732675 HSM7J4M8 0.051643192488262914 ACI02041 tetracycline__tet(W) tetracycline 1.0 0.051643192488262914 1.5649452269170578 28361.83513176316 ARO:3000194 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10036@CAVL1ANXX170419:8:1313:10501:70436/1 P70882 100.0 28 85 641 5.38e-12 55.5 0.32941176470588235 HSM7J4M8 0.0436817472698908 P70882 tetracycline__tet(Q) tetracycline 1.0 0.0436817472698908 1.5600624024960998 28361.83513176316 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10049@CAVL1ANXX170419:8:1313:13934:25045/1 AAM48125 100.0 33 101 321 6.27e-18 72.0 0.32673267326732675 HSM7J4M8 0.102803738317757 AAM48125 beta_lactam__CfxA2 beta_lactam 1.0 0.102803738317757 3.115264797507788 28361.83513176316 ARO:3003002 ARO:0000044 ARO:3000007 +HSM7J4M8@HSM7J4M8_R1@10055@CAVL1ANXX170419:8:1313:15440:95003/1 Q02607 100.0 33 101 266 1.09e-17 70.9 0.32673267326732675 HSM7J4M8 0.12406015037593984 Q02607 macrolide-lincosamide-streptogramin__erm(F) macrolide-lincosamide-streptogramin 1.0 0.12406015037593984 3.7593984962406015 28361.83513176316 ARO:3000498 ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 +HSM7J4M8@HSM7J4M8_R1@10062@CAVL1ANXX170419:8:1313:16983:59428/1 CP004067.1.gene46.p01 100.0 33 101 306 4.62e-17 69.7 0.32673267326732675 HSM7J4M8 0.10784313725490197 CP004067.1.gene46.p01 aminoglycoside__APH(2'')-Ig aminoglycoside 1.0 0.10784313725490197 3.2679738562091503 28361.83513176316 ARO:3002669 ARO:0000013,ARO:0000049,ARO:0000052,ARO:3004015 ARO:0000016,ARO:0000016,ARO:0000016,ARO:0000016 +HSM7J4M8@HSM7J4M8_R1@10066@CAVL1ANXX170419:8:1313:1766:35546/1 FN594949.1.gene25.p01 81.818 33 101 285 1.5e-12 57.0 0.32673267326732675 HSM7J4M8 0.11578947368421053 FN594949.1.gene25.p01 aminoglycoside__ANT(6)-Ib aminoglycoside 1.0 0.11578947368421053 3.5087719298245617 28361.83513176316 ARO:3002629 ARO:0000040 ARO:0000016 +HSM7J4M8@HSM7J4M8_R1@10072@CAVL1ANXX170419:8:1313:18580:73844/1 ZP_03958019 81.25 32 101 317 1.3e-11 54.7 0.31683168316831684 HSM7J4M8 0.10094637223974763 ZP_03958019 bacitracin__bacA bacitracin 1.0 0.10094637223974763 3.1545741324921135 28361.83513176316 ARO:3002986 ARO:3000629,ARO:3000630,ARO:3000631 ARO:3000053,ARO:3000053,ARO:3000053 +HSM7J4M8@HSM7J4M8_R1@10086@CAVL1ANXX170419:8:1313:4017:5299/1 P70882 100.0 30 92 641 1.83e-14 62.4 0.32608695652173914 HSM7J4M8 0.046801872074883 P70882 tetracycline__tet(Q) tetracycline 1.0 0.046801872074883 1.5600624024960998 28361.83513176316 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10101@CAVL1ANXX170419:8:1313:7339:77989/1 AAV37206 100.0 33 101 321 3.44e-17 70.1 0.32673267326732675 HSM7J4M8 0.102803738317757 AAV37206 beta_lactam__CfxA5 beta_lactam 1.0 0.102803738317757 3.115264797507788 28361.83513176316 ARO:3003096 ARO:0000044 ARO:3000007 +HSM7J4M8@HSM7J4M8_R1@10110@CAVL1ANXX170419:8:1314:10021:16729/1 AAZ79478 100.0 33 101 657 2.61e-17 70.9 0.32673267326732675 HSM7J4M8 0.0502283105022831 AAZ79478 tetracycline__tet(Q) tetracycline 1.0 0.0502283105022831 1.5220700152207 28361.83513176316 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10113@CAVL1ANXX170419:8:1314:10676:16294/1 P70882 100.0 33 101 641 3.94e-19 75.9 0.32673267326732675 HSM7J4M8 0.0514820592823713 P70882 tetracycline__tet(Q) tetracycline 1.0 0.0514820592823713 1.5600624024960998 28361.83513176316 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@1011@CAVL1ANXX170419:7:1115:7271:55280/1 AAM48116 100.0 30 92 321 3.62e-15 64.3 0.32608695652173914 HSM7J4M8 0.09345794392523364 AAM48116 beta_lactam__CfxA2 beta_lactam 1.0 0.09345794392523364 3.115264797507788 28361.83513176316 ARO:3003002 ARO:0000044 ARO:3000007 +HSM7J4M8@HSM7J4M8_R1@10129@CAVL1ANXX170419:8:1314:15456:57353/1 gb|ADP36409.1|ARO:3003730|Bifidobacteria 90.909 33 101 1107 1.93e-18 73.9 0.32673267326732675 HSM7J4M8 0.02981029810298103 gb|ADP36409.1|ARO:3003730|Bifidobacteria mupirocin__Bifidobacteria intrinsic ileS conferring resistance to mupirocin mupirocin 1.0 0.02981029810298103 0.903342366757001 28361.83513176316 ARO:3003730 ARO:3000554 ARO:3007151 +HSM7J4M8@HSM7J4M8_R1@10135@CAVL1ANXX170419:8:1314:16585:71877/1 gi|1004359892|gb|AMP42199.1| 100.0 33 100 639 5.31e-16 67.0 0.33 HSM7J4M8 0.051643192488262914 gi|1004359892|gb|AMP42199.1| tetracycline__tet(W) tetracycline 1.0 0.051643192488262914 1.5649452269170578 28361.83513176316 ARO:3000194 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10150@CAVL1ANXX170419:8:1314:18900:3931/1 AAM48125 100.0 32 101 321 5.41e-16 66.6 0.31683168316831684 HSM7J4M8 0.09968847352024922 AAM48125 beta_lactam__CfxA2 beta_lactam 1.0 0.09968847352024922 3.115264797507788 28361.83513176316 ARO:3003002 ARO:0000044 ARO:3000007 +HSM7J4M8@HSM7J4M8_R1@10151@CAVL1ANXX170419:8:1314:19523:91210/1 Q52360 100.0 27 81 641 1.42e-11 54.3 0.3333333333333333 HSM7J4M8 0.0421216848673947 Q52360 tetracycline__tet(Q) tetracycline 1.0 0.0421216848673947 1.5600624024960998 28361.83513176316 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10152@CAVL1ANXX170419:8:1314:19526:30733/1 gb|ADZ12699.1|ARO:3005091|RanA 93.939 33 101 258 7.63e-18 71.2 0.32673267326732675 HSM7J4M8 0.12790697674418605 gb|ADZ12699.1|ARO:3005091|RanA multidrug__RanA multidrug 1.0 0.12790697674418605 3.875968992248062 28361.83513176316 ARO:3005091 +HSM7J4M8@HSM7J4M8_R1@10179@CAVL1ANXX170419:8:1314:5737:94563/1 AAM48125 100.0 33 101 321 1.52e-17 70.9 0.32673267326732675 HSM7J4M8 0.102803738317757 AAM48125 beta_lactam__CfxA2 beta_lactam 1.0 0.102803738317757 3.115264797507788 28361.83513176316 ARO:3003002 ARO:0000044 ARO:3000007 +HSM7J4M8@HSM7J4M8_R1@10184@CAVL1ANXX170419:8:1314:7193:99506/1 P30898 96.97 33 101 296 3.92e-17 69.7 0.32673267326732675 HSM7J4M8 0.11148648648648649 P30898 beta_lactam__CblA-1 beta_lactam 1.0 0.11148648648648649 3.3783783783783785 28361.83513176316 ARO:3002999 ARO:0000032,ARO:3004129 ARO:3000007,ARO:3000007 +HSM7J4M8@HSM7J4M8_R1@10186@CAVL1ANXX170419:8:1314:7812:76944/1 ABG81258 100.0 33 101 639 4.47e-18 72.8 0.32673267326732675 HSM7J4M8 0.051643192488262914 ABG81258 tetracycline__tet(W) tetracycline 1.0 0.051643192488262914 1.5649452269170578 28361.83513176316 ARO:3007122 ARO:0000051 ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@1018@CAVL1ANXX170419:7:1115:9822:47166/1 M15332.gene.p01 96.97 33 101 244 1.1e-16 67.8 0.32673267326732675 HSM7J4M8 0.13524590163934427 M15332.gene.p01 macrolide-lincosamide-streptogramin__erm(G) macrolide-lincosamide-streptogramin 1.0 0.13524590163934427 4.098360655737705 28361.83513176316 ARO:3000522 ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 +HSM7J4M8@HSM7J4M8_R1@10196@CAVL1ANXX170419:8:1314:9707:25559/1 YP_002937728 100.0 33 101 289 4.19e-16 67.0 0.32673267326732675 HSM7J4M8 0.11418685121107267 YP_002937728 bacitracin__bacA bacitracin 1.0 0.11418685121107267 3.4602076124567476 28361.83513176316 ARO:3002986 ARO:3000629,ARO:3000630,ARO:3000631 ARO:3000053,ARO:3000053,ARO:3000053 +HSM7J4M8@HSM7J4M8_R1@10200@CAVL1ANXX170419:8:1315:10876:4493/1 gb|AAF74725.1|ARO:3004659|Mef(En2) 100.0 32 99 401 1.01e-16 68.9 0.32323232323232326 HSM7J4M8 0.0798004987531172 gb|AAF74725.1|ARO:3004659|Mef(En2) macrolide-lincosamide-streptogramin__mef(En2) macrolide-lincosamide-streptogramin 1.0 0.0798004987531172 2.4937655860349124 28361.83513176316 ARO:3004659 ARO:0000046 ARO:0000017 +HSM7J4M8@HSM7J4M8_R1@10228@CAVL1ANXX170419:8:1315:1769:51996/1 gb|AMP42147.1|ARO:3004442|tet(W/N/W) 100.0 33 101 639 1.77e-17 71.2 0.32673267326732675 HSM7J4M8 0.051643192488262914 gb|AMP42147.1|ARO:3004442|tet(W/N/W) tetracycline__tet(W/N/W) tetracycline 1.0 0.051643192488262914 1.5649452269170578 28361.83513176316 ARO:3004442 ARO:0000051,ARO:3000152,ARO:3000528 ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@1022@CAVL1ANXX170419:7:1116:10770:71910/1 AAC37034 100.0 33 99 244 3.16e-18 72.0 0.3333333333333333 HSM7J4M8 0.13524590163934427 AAC37034 macrolide-lincosamide-streptogramin__erm(G) macrolide-lincosamide-streptogramin 1.0 0.13524590163934427 4.098360655737705 28361.83513176316 ARO:3000522 ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 +HSM7J4M8@HSM7J4M8_R1@10230@CAVL1ANXX170419:8:1315:18445:87159/1 gb|AAF74725.1|ARO:3004659|Mef(En2) 100.0 26 80 401 1.98e-11 53.5 0.325 HSM7J4M8 0.06483790523690773 gb|AAF74725.1|ARO:3004659|Mef(En2) macrolide-lincosamide-streptogramin__mef(En2) macrolide-lincosamide-streptogramin 1.0 0.06483790523690773 2.4937655860349124 28361.83513176316 ARO:3004659 ARO:0000046 ARO:0000017 +HSM7J4M8@HSM7J4M8_R1@10246@CAVL1ANXX170419:8:1315:2959:6974/1 WP_000691721.1 100.0 33 101 639 2.82e-17 70.5 0.32673267326732675 HSM7J4M8 0.051643192488262914 WP_000691721.1 tetracycline__tet(W) tetracycline 1.0 0.051643192488262914 1.5649452269170578 28361.83513176316 ARO:3000194 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10247@CAVL1ANXX170419:8:1315:2983:70214/1 AAM48125 100.0 33 101 321 1.55e-17 70.9 0.32673267326732675 HSM7J4M8 0.102803738317757 AAM48125 beta_lactam__CfxA2 beta_lactam 1.0 0.102803738317757 3.115264797507788 28361.83513176316 ARO:3003002 ARO:0000044 ARO:3000007 +HSM7J4M8@HSM7J4M8_R1@10250@CAVL1ANXX170419:8:1315:3829:25923/1 gi|104303742|gb|ABF72138.1| 100.0 33 101 639 1.92e-15 65.5 0.32673267326732675 HSM7J4M8 0.051643192488262914 gi|104303742|gb|ABF72138.1| tetracycline__tet(W) tetracycline 1.0 0.051643192488262914 1.5649452269170578 28361.83513176316 ARO:3000194 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10260@CAVL1ANXX170419:8:1315:6291:85992/1 gb|ADP36409.1|ARO:3003730|Bifidobacteria 96.97 33 101 1107 2.96e-16 67.8 0.32673267326732675 HSM7J4M8 0.02981029810298103 gb|ADP36409.1|ARO:3003730|Bifidobacteria mupirocin__Bifidobacteria intrinsic ileS conferring resistance to mupirocin mupirocin 1.0 0.02981029810298103 0.903342366757001 28361.83513176316 ARO:3003730 ARO:3000554 ARO:3007151 +HSM7J4M8@HSM7J4M8_R1@10268@CAVL1ANXX170419:8:1315:8592:36603/1 CAG30567 100.0 33 101 639 6.78e-17 69.7 0.32673267326732675 HSM7J4M8 0.051643192488262914 CAG30567 tetracycline__tet(O) tetracycline 1.0 0.051643192488262914 1.5649452269170578 28361.83513176316 ARO:3000190 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10271@CAVL1ANXX170419:8:1315:9004:100773/1 gb|AAF74725.1|ARO:3004659|Mef(En2) 100.0 30 93 401 6.83e-14 60.8 0.3225806451612903 HSM7J4M8 0.07481296758104738 gb|AAF74725.1|ARO:3004659|Mef(En2) macrolide-lincosamide-streptogramin__mef(En2) macrolide-lincosamide-streptogramin 1.0 0.07481296758104738 2.4937655860349124 28361.83513176316 ARO:3004659 ARO:0000046 ARO:0000017 +HSM7J4M8@HSM7J4M8_R1@10272@CAVL1ANXX170419:8:1315:9328:72579/1 AF118110.1.gene1.p01 100.0 33 101 321 7.3e-18 72.0 0.32673267326732675 HSM7J4M8 0.102803738317757 AF118110.1.gene1.p01 beta_lactam__CfxA2 beta_lactam 1.0 0.102803738317757 3.115264797507788 28361.83513176316 ARO:3003002 ARO:0000044 ARO:3000007 +HSM7J4M8@HSM7J4M8_R1@10273@CAVL1ANXX170419:8:1315:9398:54240/1 gb|ADZ12700.1|ARO:3005090|RanB 81.25 32 101 253 2.47e-10 50.8 0.31683168316831684 HSM7J4M8 0.12648221343873517 gb|ADZ12700.1|ARO:3005090|RanB multidrug__RanB multidrug 1.0 0.12648221343873517 3.952569169960474 28361.83513176316 ARO:3005090 +HSM7J4M8@HSM7J4M8_R1@10275@CAVL1ANXX170419:8:1316:10414:20968/1 gi|511019447|ref|WP_016273783.1| 100.0 33 101 296 5.95e-15 63.5 0.32673267326732675 HSM7J4M8 0.11148648648648649 gi|511019447|ref|WP_016273783.1| beta_lactam__CblA-1 beta_lactam 1.0 0.11148648648648649 3.3783783783783785 28361.83513176316 ARO:3002999 ARO:0000032,ARO:3004129 ARO:3000007,ARO:3000007 +HSM7J4M8@HSM7J4M8_R1@10285@CAVL1ANXX170419:8:1316:12907:25816/1 gi|1028100289|ref|WP_063856424.1| 100.0 32 100 639 3.72e-18 73.2 0.32 HSM7J4M8 0.050078247261345854 gi|1028100289|ref|WP_063856424.1| tetracycline__tet(W) tetracycline 1.0 0.050078247261345854 1.5649452269170578 28361.83513176316 ARO:3000194 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10291@CAVL1ANXX170419:8:1316:14001:95599/1 AAZ79478 100.0 33 101 657 3.45e-16 67.4 0.32673267326732675 HSM7J4M8 0.0502283105022831 AAZ79478 tetracycline__tet(Q) tetracycline 1.0 0.0502283105022831 1.5220700152207 28361.83513176316 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10294@CAVL1ANXX170419:8:1316:14709:6531/1 gb|AAC74000.1|ARO:3003950|msbA 90.909 33 101 582 4.09e-16 67.4 0.32673267326732675 HSM7J4M8 0.05670103092783505 gb|AAC74000.1|ARO:3003950|msbA multidrug__msbA multidrug 1.0 0.05670103092783505 1.718213058419244 28361.83513176316 ARO:3003950 ARO:3000689 ARO:3004115 +HSM7J4M8@HSM7J4M8_R1@10300@CAVL1ANXX170419:8:1316:15281:96519/1 gb|AAC75089.1|ARO:3003577|ugd 87.879 33 101 388 3.54e-18 73.2 0.32673267326732675 HSM7J4M8 0.08505154639175258 gb|AAC75089.1|ARO:3003577|ugd polymyxin__ugd polymyxin 1.0 0.08505154639175258 2.5773195876288657 28361.83513176316 ARO:3003577 ARO:3000454 ARO:3000053 +HSM7J4M8@HSM7J4M8_R1@10308@CAVL1ANXX170419:8:1316:17638:85747/1 AAB51122 100.0 33 101 670 9.05e-20 77.8 0.32673267326732675 HSM7J4M8 0.049253731343283584 AAB51122 tetracycline__tet(Q) tetracycline 1.0 0.049253731343283584 1.4925373134328357 28361.83513176316 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10317@CAVL1ANXX170419:8:1316:19805:21132/1 AAZ79478 100.0 33 101 657 2.68e-16 67.8 0.32673267326732675 HSM7J4M8 0.0502283105022831 AAZ79478 tetracycline__tet(Q) tetracycline 1.0 0.0502283105022831 1.5220700152207 28361.83513176316 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@1031@CAVL1ANXX170419:7:1116:12595:100756/1 BAD46890 100.0 33 101 657 1.78e-16 68.6 0.32673267326732675 HSM7J4M8 0.0502283105022831 BAD46890 tetracycline__tet(Q) tetracycline 1.0 0.0502283105022831 1.5220700152207 28361.83513176316 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10321@CAVL1ANXX170419:8:1316:20762:9554/1 BAD46890 100.0 33 101 657 1.84e-19 77.0 0.32673267326732675 HSM7J4M8 0.0502283105022831 BAD46890 tetracycline__tet(Q) tetracycline 1.0 0.0502283105022831 1.5220700152207 28361.83513176316 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10323@CAVL1ANXX170419:8:1316:20974:99145/1 AF472622.2.gene1.p01 100.0 33 101 321 1.44e-17 71.2 0.32673267326732675 HSM7J4M8 0.102803738317757 AF472622.2.gene1.p01 beta_lactam__CfxA3 beta_lactam 1.0 0.102803738317757 3.115264797507788 28361.83513176316 ARO:3003003 ARO:0000044 ARO:3000007 +HSM7J4M8@HSM7J4M8_R1@10328@CAVL1ANXX170419:8:1316:3559:50711/1 ABP89888 93.103 29 101 644 2.64e-13 59.3 0.2871287128712871 HSM7J4M8 0.04503105590062112 ABP89888 tetracycline__tet(M) tetracycline 1.0 0.04503105590062112 1.5527950310559007 28361.83513176316 ARO:3000186 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10332@CAVL1ANXX170419:8:1316:4678:49041/1 gb|AAF74725.1|ARO:3004659|Mef(En2) 100.0 33 101 401 8.2e-16 66.6 0.32673267326732675 HSM7J4M8 0.08229426433915212 gb|AAF74725.1|ARO:3004659|Mef(En2) macrolide-lincosamide-streptogramin__mef(En2) macrolide-lincosamide-streptogramin 1.0 0.08229426433915212 2.4937655860349124 28361.83513176316 ARO:3004659 ARO:0000046 ARO:0000017 +HSM7J4M8@HSM7J4M8_R1@10334@CAVL1ANXX170419:8:1316:5398:18590/1 AAR29485 100.0 33 101 639 5.53e-17 69.7 0.32673267326732675 HSM7J4M8 0.051643192488262914 AAR29485 tetracycline__tet(O) tetracycline 1.0 0.051643192488262914 1.5649452269170578 28361.83513176316 ARO:3007120 ARO:0000051 ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@1033@CAVL1ANXX170419:7:1116:13090:66581/1 CAX85496 96.97 33 101 639 4.77e-17 70.1 0.32673267326732675 HSM7J4M8 0.051643192488262914 CAX85496 tetracycline__tet(W) tetracycline 1.0 0.051643192488262914 1.5649452269170578 28361.83513176316 ARO:3000194 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10342@CAVL1ANXX170419:8:1316:9261:28515/1 P70882 100.0 33 101 641 1.93e-18 73.9 0.32673267326732675 HSM7J4M8 0.0514820592823713 P70882 tetracycline__tet(Q) tetracycline 1.0 0.0514820592823713 1.5600624024960998 28361.83513176316 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10351@CAVL1ANXX170419:8:2101:12641:72140/1 ZP_04055725 84.375 32 100 283 1.6e-12 57.0 0.32 HSM7J4M8 0.11307420494699646 ZP_04055725 bacitracin__bacA bacitracin 1.0 0.11307420494699646 3.53356890459364 28361.83513176316 ARO:3002986 ARO:3000629,ARO:3000630,ARO:3000631 ARO:3000053,ARO:3000053,ARO:3000053 +HSM7J4M8@HSM7J4M8_R1@10353@CAVL1ANXX170419:8:2101:13329:27553/1 gb|AAF74725.1|ARO:3004659|Mef(En2) 100.0 33 101 401 8.12e-16 66.6 0.32673267326732675 HSM7J4M8 0.08229426433915212 gb|AAF74725.1|ARO:3004659|Mef(En2) macrolide-lincosamide-streptogramin__mef(En2) macrolide-lincosamide-streptogramin 1.0 0.08229426433915212 2.4937655860349124 28361.83513176316 ARO:3004659 ARO:0000046 ARO:0000017 +HSM7J4M8@HSM7J4M8_R1@10354@CAVL1ANXX170419:8:2101:13494:29179/1 gb|AAF74725.1|ARO:3004659|Mef(En2) 100.0 29 89 401 2.86e-13 58.9 0.3258426966292135 HSM7J4M8 0.07231920199501247 gb|AAF74725.1|ARO:3004659|Mef(En2) macrolide-lincosamide-streptogramin__mef(En2) macrolide-lincosamide-streptogramin 1.0 0.07231920199501247 2.4937655860349124 28361.83513176316 ARO:3004659 ARO:0000046 ARO:0000017 +HSM7J4M8@HSM7J4M8_R1@10360@CAVL1ANXX170419:8:2101:14127:31725/1 WP_002857791.1 96.97 33 101 639 2.55e-16 67.8 0.32673267326732675 HSM7J4M8 0.051643192488262914 WP_002857791.1 tetracycline__tet(O) tetracycline 1.0 0.051643192488262914 1.5649452269170578 28361.83513176316 ARO:3000190 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10366@CAVL1ANXX170419:8:2101:15490:5729/1 BAC77251 80.0 25 79 1051 4.08e-09 47.0 0.31645569620253167 HSM7J4M8 0.023786869647954328 BAC77251 multidrug__sdeY multidrug 0.3333333333333333 0.00792895654931811 0.3171582619727244 28361.83513176316 ARO:3000216 ARO:0000045 ARO:3005386 +HSM7J4M8@HSM7J4M8_R1@10372@CAVL1ANXX170419:8:2101:16652:94976/1 gb|ADP36409.1|ARO:3003730|Bifidobacteria 100.0 33 101 1107 2.74e-18 73.6 0.32673267326732675 HSM7J4M8 0.02981029810298103 gb|ADP36409.1|ARO:3003730|Bifidobacteria mupirocin__Bifidobacteria intrinsic ileS conferring resistance to mupirocin mupirocin 1.0 0.02981029810298103 0.903342366757001 28361.83513176316 ARO:3003730 ARO:3000554 ARO:3007151 +HSM7J4M8@HSM7J4M8_R1@10373@CAVL1ANXX170419:8:2101:16725:65148/1 U38243.1.gene1.p01 100.0 33 100 321 3.69e-16 67.0 0.33 HSM7J4M8 0.102803738317757 U38243.1.gene1.p01 beta_lactam__CfxA beta_lactam 1.0 0.102803738317757 3.115264797507788 28361.83513176316 ARO:3003001 ARO:0000008,ARO:0000044,ARO:3004001,ARO:3004004,ARO:3004014 ARO:3000007,ARO:3000007,ARO:3000007,ARO:3000007,ARO:3000007 +HSM7J4M8@HSM7J4M8_R1@10379@CAVL1ANXX170419:8:2101:17730:26798/1 YP_523088 80.0 30 101 277 1.95e-09 48.5 0.297029702970297 HSM7J4M8 0.10830324909747292 YP_523088 bacitracin__bacA bacitracin 1.0 0.10830324909747292 3.6101083032490973 28361.83513176316 ARO:3002986 ARO:3000629,ARO:3000630,ARO:3000631 ARO:3000053,ARO:3000053,ARO:3000053 +HSM7J4M8@HSM7J4M8_R1@10384@CAVL1ANXX170419:8:2101:19594:93083/1 gb|AAF74725.1|ARO:3004659|Mef(En2) 100.0 33 101 401 3.15e-15 64.7 0.32673267326732675 HSM7J4M8 0.08229426433915212 gb|AAF74725.1|ARO:3004659|Mef(En2) macrolide-lincosamide-streptogramin__mef(En2) macrolide-lincosamide-streptogramin 1.0 0.08229426433915212 2.4937655860349124 28361.83513176316 ARO:3004659 ARO:0000046 ARO:0000017 +HSM7J4M8@HSM7J4M8_R1@10386@CAVL1ANXX170419:8:2101:1962:34200/1 gb|AAF74725.1|ARO:3004659|Mef(En2) 100.0 32 98 401 2.87e-16 67.8 0.32653061224489793 HSM7J4M8 0.0798004987531172 gb|AAF74725.1|ARO:3004659|Mef(En2) macrolide-lincosamide-streptogramin__mef(En2) macrolide-lincosamide-streptogramin 1.0 0.0798004987531172 2.4937655860349124 28361.83513176316 ARO:3004659 ARO:0000046 ARO:0000017 +HSM7J4M8@HSM7J4M8_R1@10394@CAVL1ANXX170419:8:2101:2114:24248/1 AAM48125 100.0 33 101 321 3.24e-18 72.8 0.32673267326732675 HSM7J4M8 0.102803738317757 AAM48125 beta_lactam__CfxA2 beta_lactam 1.0 0.102803738317757 3.115264797507788 28361.83513176316 ARO:3003002 ARO:0000044 ARO:3000007 +HSM7J4M8@HSM7J4M8_R1@1039@CAVL1ANXX170419:7:1116:14215:55660/1 gb|ADP36409.1|ARO:3003730|Bifidobacteria 100.0 33 101 1107 1.55e-19 77.0 0.32673267326732675 HSM7J4M8 0.02981029810298103 gb|ADP36409.1|ARO:3003730|Bifidobacteria mupirocin__Bifidobacteria intrinsic ileS conferring resistance to mupirocin mupirocin 1.0 0.02981029810298103 0.903342366757001 28361.83513176316 ARO:3003730 ARO:3000554 ARO:3007151 +HSM7J4M8@HSM7J4M8_R1@10419@CAVL1ANXX170419:8:2101:9822:42936/1 gb|AAD01868.1|ARO:3002867|dfrF 100.0 32 98 164 3.21e-18 70.5 0.32653061224489793 HSM7J4M8 0.1951219512195122 gb|AAD01868.1|ARO:3002867|dfrF trimethoprim__dfrF trimethoprim 1.0 0.1951219512195122 6.097560975609756 28361.83513176316 ARO:3002867 ARO:3000188 ARO:3000171 +HSM7J4M8@HSM7J4M8_R1@10428@CAVL1ANXX170419:8:2102:12398:65615/1 ZP_04557016 100.0 33 101 657 2.18e-16 68.2 0.32673267326732675 HSM7J4M8 0.0502283105022831 ZP_04557016 tetracycline__tet(Q) tetracycline 1.0 0.0502283105022831 1.5220700152207 28361.83513176316 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10429@CAVL1ANXX170419:8:2102:12465:74058/1 P70882 100.0 32 100 641 4.97e-17 70.1 0.32 HSM7J4M8 0.0499219968798752 P70882 tetracycline__tet(Q) tetracycline 1.0 0.0499219968798752 1.5600624024960998 28361.83513176316 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10436@CAVL1ANXX170419:8:2102:14150:70480/1 CAD13485 100.0 33 101 639 6.03e-17 69.7 0.32673267326732675 HSM7J4M8 0.051643192488262914 CAD13485 tetracycline__tet(W) tetracycline 1.0 0.051643192488262914 1.5649452269170578 28361.83513176316 ARO:3000194 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10441@CAVL1ANXX170419:8:2102:1465:98204/1 AAA27431 100.0 33 101 266 7.28e-18 71.2 0.32673267326732675 HSM7J4M8 0.12406015037593984 AAA27431 macrolide-lincosamide-streptogramin__erm(F) macrolide-lincosamide-streptogramin 1.0 0.12406015037593984 3.7593984962406015 28361.83513176316 ARO:3000498 ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 +HSM7J4M8@HSM7J4M8_R1@10446@CAVL1ANXX170419:8:2102:15404:96717/1 gi|254967129|gb|ACT97610.1| 100.0 33 101 639 3.34e-19 76.3 0.32673267326732675 HSM7J4M8 0.051643192488262914 gi|254967129|gb|ACT97610.1| tetracycline__tet(W) tetracycline 1.0 0.051643192488262914 1.5649452269170578 28361.83513176316 ARO:3000194 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10462@CAVL1ANXX170419:8:2102:18826:89560/1 AAB51122 100.0 25 77 670 6.31e-11 52.0 0.3246753246753247 HSM7J4M8 0.03731343283582089 AAB51122 tetracycline__tet(Q) tetracycline 1.0 0.03731343283582089 1.4925373134328357 28361.83513176316 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10464@CAVL1ANXX170419:8:2102:2000:74673/1 Q52360 100.0 26 81 641 6.74e-12 55.1 0.32098765432098764 HSM7J4M8 0.0405616224648986 Q52360 tetracycline__tet(Q) tetracycline 1.0 0.0405616224648986 1.5600624024960998 28361.83513176316 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10469@CAVL1ANXX170419:8:2102:20786:34504/1 gb|AAF74725.1|ARO:3004659|Mef(En2) 100.0 33 101 401 2.72e-15 65.1 0.32673267326732675 HSM7J4M8 0.08229426433915212 gb|AAF74725.1|ARO:3004659|Mef(En2) macrolide-lincosamide-streptogramin__mef(En2) macrolide-lincosamide-streptogramin 1.0 0.08229426433915212 2.4937655860349124 28361.83513176316 ARO:3004659 ARO:0000046 ARO:0000017 +HSM7J4M8@HSM7J4M8_R1@10473@CAVL1ANXX170419:8:2102:3329:84182/1 gb|AAF74725.1|ARO:3004659|Mef(En2) 100.0 33 100 401 8.96e-17 69.3 0.33 HSM7J4M8 0.08229426433915212 gb|AAF74725.1|ARO:3004659|Mef(En2) macrolide-lincosamide-streptogramin__mef(En2) macrolide-lincosamide-streptogramin 1.0 0.08229426433915212 2.4937655860349124 28361.83513176316 ARO:3004659 ARO:0000046 ARO:0000017 +HSM7J4M8@HSM7J4M8_R1@10478@CAVL1ANXX170419:8:2102:3789:57280/1 gb|APB03219.1|ARO:3003986|TaeA 84.848 33 101 648 9.17e-15 63.5 0.32673267326732675 HSM7J4M8 0.05092592592592592 gb|APB03219.1|ARO:3003986|TaeA pleuromutilin_tiamulin__TaeA pleuromutilin_tiamulin 1.0 0.05092592592592592 1.5432098765432098 28361.83513176316 ARO:3003986 ARO:3001317 ARO:3000670 +HSM7J4M8@HSM7J4M8_R1@10484@CAVL1ANXX170419:8:2102:5024:29234/1 gb|AAF74725.1|ARO:3004659|Mef(En2) 93.939 33 101 401 3.96e-14 61.6 0.32673267326732675 HSM7J4M8 0.08229426433915212 gb|AAF74725.1|ARO:3004659|Mef(En2) macrolide-lincosamide-streptogramin__mef(En2) macrolide-lincosamide-streptogramin 1.0 0.08229426433915212 2.4937655860349124 28361.83513176316 ARO:3004659 ARO:0000046 ARO:0000017 +HSM7J4M8@HSM7J4M8_R1@10489@CAVL1ANXX170419:8:2102:5840:85120/1 AY485126.gene.p01 100.0 26 79 639 1.07e-11 54.3 0.3291139240506329 HSM7J4M8 0.0406885758998435 AY485126.gene.p01 tetracycline__tet(O/W) tetracycline 1.0 0.0406885758998435 1.5649452269170578 28361.83513176316 ARO:3007121 ARO:0000051 ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10500@CAVL1ANXX170419:8:2102:8030:84156/1 gb|ADP36409.1|ARO:3003730|Bifidobacteria 86.667 30 92 1107 5.83e-15 63.9 0.32608695652173914 HSM7J4M8 0.02710027100271003 gb|ADP36409.1|ARO:3003730|Bifidobacteria mupirocin__Bifidobacteria intrinsic ileS conferring resistance to mupirocin mupirocin 1.0 0.02710027100271003 0.903342366757001 28361.83513176316 ARO:3003730 ARO:3000554 ARO:3007151 +HSM7J4M8@HSM7J4M8_R1@10501@CAVL1ANXX170419:8:2102:8479:17608/1 gb|ADZ12700.1|ARO:3005090|RanB 84.848 33 101 253 2.51e-13 58.9 0.32673267326732675 HSM7J4M8 0.13043478260869565 gb|ADZ12700.1|ARO:3005090|RanB multidrug__RanB multidrug 1.0 0.13043478260869565 3.952569169960474 28361.83513176316 ARO:3005090 +HSM7J4M8@HSM7J4M8_R1@10513@CAVL1ANXX170419:8:2103:12732:64547/1 FN594949.1.gene24.p01 100.0 28 85 640 3.74e-13 58.5 0.32941176470588235 HSM7J4M8 0.04375 FN594949.1.gene24.p01 tetracycline__tet(44) tetracycline 1.0 0.04375 1.5625 28361.83513176316 ARO:3000556 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10514@CAVL1ANXX170419:8:2103:13328:98394/1 Z21523.gene.p01 96.552 29 87 657 1.49e-14 62.8 0.3333333333333333 HSM7J4M8 0.0441400304414003 Z21523.gene.p01 tetracycline__tet(Q) tetracycline 1.0 0.0441400304414003 1.5220700152207 28361.83513176316 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10517@CAVL1ANXX170419:8:2103:14435:84844/1 ZP_03989103 100.0 29 90 639 1.78e-14 62.4 0.32222222222222224 HSM7J4M8 0.04538341158059468 ZP_03989103 tetracycline__tet(32) tetracycline 1.0 0.04538341158059468 1.5649452269170578 28361.83513176316 ARO:3000196 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@1051@CAVL1ANXX170419:7:1116:16548:53295/1 gb|AAF74725.1|ARO:3004659|Mef(En2) 100.0 33 101 401 8.12e-16 66.6 0.32673267326732675 HSM7J4M8 0.08229426433915212 gb|AAF74725.1|ARO:3004659|Mef(En2) macrolide-lincosamide-streptogramin__mef(En2) macrolide-lincosamide-streptogramin 1.0 0.08229426433915212 2.4937655860349124 28361.83513176316 ARO:3004659 ARO:0000046 ARO:0000017 +HSM7J4M8@HSM7J4M8_R1@10524@CAVL1ANXX170419:8:2103:16740:84348/1 AAV37206 100.0 33 101 321 3.21e-17 70.1 0.32673267326732675 HSM7J4M8 0.102803738317757 AAV37206 beta_lactam__CfxA5 beta_lactam 1.0 0.102803738317757 3.115264797507788 28361.83513176316 ARO:3003096 ARO:0000044 ARO:3000007 +HSM7J4M8@HSM7J4M8_R1@10531@CAVL1ANXX170419:8:2103:18518:6060/1 gi|983204316|ref|WP_060470352.1| 81.818 33 101 405 1.53e-11 54.3 0.32673267326732675 HSM7J4M8 0.08148148148148149 gi|983204316|ref|WP_060470352.1| macrolide-lincosamide-streptogramin__mel macrolide-lincosamide-streptogramin 1.0 0.08148148148148149 2.4691358024691357 28361.83513176316 ARO:3000616 ARO:0000006,ARO:0000057 ARO:0000000,ARO:0000000 +HSM7J4M8@HSM7J4M8_R1@10535@CAVL1ANXX170419:8:2103:19290:67725/1 BAD46890 100.0 33 101 657 5.41e-15 64.3 0.32673267326732675 HSM7J4M8 0.0502283105022831 BAD46890 tetracycline__tet(Q) tetracycline 1.0 0.0502283105022831 1.5220700152207 28361.83513176316 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10538@CAVL1ANXX170419:8:2103:20166:76320/1 ZP_04055725 84.848 33 101 283 6.62e-14 60.8 0.32673267326732675 HSM7J4M8 0.1166077738515901 ZP_04055725 bacitracin__bacA bacitracin 1.0 0.1166077738515901 3.53356890459364 28361.83513176316 ARO:3002986 ARO:3000629,ARO:3000630,ARO:3000631 ARO:3000053,ARO:3000053,ARO:3000053 +HSM7J4M8@HSM7J4M8_R1@10544@CAVL1ANXX170419:8:2103:2552:10242/1 AF472622.2.gene1.p01 96.97 33 101 321 7.35e-17 68.9 0.32673267326732675 HSM7J4M8 0.102803738317757 AF472622.2.gene1.p01 beta_lactam__CfxA3 beta_lactam 1.0 0.102803738317757 3.115264797507788 28361.83513176316 ARO:3003003 ARO:0000044 ARO:3000007 +HSM7J4M8@HSM7J4M8_R1@10551@CAVL1ANXX170419:8:2103:4570:86818/1 M14730.gene.p01 100.0 33 101 266 5.17e-18 71.6 0.32673267326732675 HSM7J4M8 0.12406015037593984 M14730.gene.p01 macrolide-lincosamide-streptogramin__erm(F) macrolide-lincosamide-streptogramin 1.0 0.12406015037593984 3.7593984962406015 28361.83513176316 ARO:3000498 ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 +HSM7J4M8@HSM7J4M8_R1@10552@CAVL1ANXX170419:8:2103:4941:41693/1 P70882 100.0 33 101 641 2.21e-18 73.9 0.32673267326732675 HSM7J4M8 0.0514820592823713 P70882 tetracycline__tet(Q) tetracycline 1.0 0.0514820592823713 1.5600624024960998 28361.83513176316 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10556@CAVL1ANXX170419:8:2103:6322:54059/1 AAM48125 100.0 33 101 321 5.77e-17 69.3 0.32673267326732675 HSM7J4M8 0.102803738317757 AAM48125 beta_lactam__CfxA2 beta_lactam 1.0 0.102803738317757 3.115264797507788 28361.83513176316 ARO:3003002 ARO:0000044 ARO:3000007 +HSM7J4M8@HSM7J4M8_R1@10568@CAVL1ANXX170419:8:2103:9384:19852/1 BAD46890 100.0 33 101 657 2.63e-17 70.9 0.32673267326732675 HSM7J4M8 0.0502283105022831 BAD46890 tetracycline__tet(Q) tetracycline 1.0 0.0502283105022831 1.5220700152207 28361.83513176316 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10569@CAVL1ANXX170419:8:2103:9417:90711/1 AAZ79478 100.0 33 101 657 2.68e-16 67.8 0.32673267326732675 HSM7J4M8 0.0502283105022831 AAZ79478 tetracycline__tet(Q) tetracycline 1.0 0.0502283105022831 1.5220700152207 28361.83513176316 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8@HSM7J4M8_R1@10570@CAVL1ANXX170419:8:2103:9525:62852/1 AAM48116 100.0 33 101 321 2.25e-17 70.5 0.32673267326732675 HSM7J4M8 0.102803738317757 AAM48116 beta_lactam__CfxA2 beta_lactam 1.0 0.102803738317757 3.115264797507788 28361.83513176316 ARO:3003002 ARO:0000044 ARO:3000007
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/blastout.filtered.txt Wed Aug 28 20:27:17 2024 +0000 @@ -0,0 +1,100 @@ +qseqid sseqid pident length qlen slen evalue bitscore qcov sample scov gene subtype type count copy rpk rpksum +HSM7J4M8@HSM7J4M8_R1@10007@CAVL1ANXX170419:8:1312:3147:65962/1 gi|751930065|ref|WP_041144773.1| 84.848 33 101 648 6.19e-12 55.5 0.32673267326732675 HSM7J4M8 0.05092592592592592 gi|751930065|ref|WP_041144773.1| macrolide-lincosamide-streptogramin__macB macrolide-lincosamide-streptogramin 0.3333333333333333 0.016975308641975308 0.51440329218107 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10017@CAVL1ANXX170419:8:1312:6960:13504/1 gb|ADP36409.1|ARO:3003730|Bifidobacteria 100.0 33 101 1107 9.96e-19 74.7 0.32673267326732675 HSM7J4M8 0.02981029810298103 gb|ADP36409.1|ARO:3003730|Bifidobacteria mupirocin__Bifidobacteria intrinsic ileS conferring resistance to mupirocin mupirocin 1.0 0.02981029810298103 0.903342366757001 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10018@CAVL1ANXX170419:8:1312:7015:67833/1 gi|490355791|ref|WP_004235564.1| 87.5 32 101 510 4.28e-13 58.9 0.31683168316831684 HSM7J4M8 0.06274509803921569 gi|490355791|ref|WP_004235564.1| multidrug__emrB multidrug 0.3333333333333333 0.02091503267973856 0.65359477124183 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10019@CAVL1ANXX170419:8:1312:7329:85173/1 gb|AAF74725.1|ARO:3004659|Mef(En2) 100.0 33 101 401 1.8e-16 68.2 0.32673267326732675 HSM7J4M8 0.08229426433915212 gb|AAF74725.1|ARO:3004659|Mef(En2) macrolide-lincosamide-streptogramin__mef(En2) macrolide-lincosamide-streptogramin 1.0 0.08229426433915212 2.4937655860349124 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10023@CAVL1ANXX170419:8:1312:8170:40475/1 ZP_04557016 100.0 33 101 657 2.5e-16 67.8 0.32673267326732675 HSM7J4M8 0.0502283105022831 ZP_04557016 tetracycline__tet(Q) tetracycline 1.0 0.0502283105022831 1.5220700152207 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10028@CAVL1ANXX170419:8:1312:8966:29123/1 ZP_04557016 96.97 33 101 657 1.36e-17 71.6 0.32673267326732675 HSM7J4M8 0.0502283105022831 ZP_04557016 tetracycline__tet(Q) tetracycline 1.0 0.0502283105022831 1.5220700152207 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@1002@CAVL1ANXX170419:7:1115:3411:87969/1 gb|AEY83581|ARO:3000510|mupB 84.848 33 101 1033 6.34e-16 66.6 0.32673267326732675 HSM7J4M8 0.031945788964181994 gb|AEY83581|ARO:3000510|mupB mupirocin__mupB mupirocin 1.0 0.031945788964181994 0.9680542110358181 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10033@CAVL1ANXX170419:8:1312:9879:14531/1 gi|511019447|ref|WP_016273783.1| 100.0 33 101 296 2.91e-18 72.8 0.32673267326732675 HSM7J4M8 0.11148648648648649 gi|511019447|ref|WP_016273783.1| beta_lactam__CblA-1 beta_lactam 1.0 0.11148648648648649 3.3783783783783785 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10034@CAVL1ANXX170419:8:1312:9988:52653/1 ACI02041 100.0 33 101 639 3.53e-17 70.5 0.32673267326732675 HSM7J4M8 0.051643192488262914 ACI02041 tetracycline__tet(W) tetracycline 1.0 0.051643192488262914 1.5649452269170578 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10036@CAVL1ANXX170419:8:1313:10501:70436/1 P70882 100.0 28 85 641 5.38e-12 55.5 0.32941176470588235 HSM7J4M8 0.0436817472698908 P70882 tetracycline__tet(Q) tetracycline 1.0 0.0436817472698908 1.5600624024960998 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10049@CAVL1ANXX170419:8:1313:13934:25045/1 AAM48125 100.0 33 101 321 6.27e-18 72.0 0.32673267326732675 HSM7J4M8 0.102803738317757 AAM48125 beta_lactam__CfxA2 beta_lactam 1.0 0.102803738317757 3.115264797507788 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10055@CAVL1ANXX170419:8:1313:15440:95003/1 Q02607 100.0 33 101 266 1.09e-17 70.9 0.32673267326732675 HSM7J4M8 0.12406015037593984 Q02607 macrolide-lincosamide-streptogramin__erm(F) macrolide-lincosamide-streptogramin 1.0 0.12406015037593984 3.7593984962406015 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10062@CAVL1ANXX170419:8:1313:16983:59428/1 CP004067.1.gene46.p01 100.0 33 101 306 4.62e-17 69.7 0.32673267326732675 HSM7J4M8 0.10784313725490197 CP004067.1.gene46.p01 aminoglycoside__APH(2'')-Ig aminoglycoside 1.0 0.10784313725490197 3.2679738562091503 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10066@CAVL1ANXX170419:8:1313:1766:35546/1 FN594949.1.gene25.p01 81.818 33 101 285 1.5e-12 57.0 0.32673267326732675 HSM7J4M8 0.11578947368421053 FN594949.1.gene25.p01 aminoglycoside__ANT(6)-Ib aminoglycoside 1.0 0.11578947368421053 3.5087719298245617 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10072@CAVL1ANXX170419:8:1313:18580:73844/1 ZP_03958019 81.25 32 101 317 1.3e-11 54.7 0.31683168316831684 HSM7J4M8 0.10094637223974763 ZP_03958019 bacitracin__bacA bacitracin 1.0 0.10094637223974763 3.1545741324921135 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10086@CAVL1ANXX170419:8:1313:4017:5299/1 P70882 100.0 30 92 641 1.83e-14 62.4 0.32608695652173914 HSM7J4M8 0.046801872074883 P70882 tetracycline__tet(Q) tetracycline 1.0 0.046801872074883 1.5600624024960998 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10101@CAVL1ANXX170419:8:1313:7339:77989/1 AAV37206 100.0 33 101 321 3.44e-17 70.1 0.32673267326732675 HSM7J4M8 0.102803738317757 AAV37206 beta_lactam__CfxA5 beta_lactam 1.0 0.102803738317757 3.115264797507788 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10110@CAVL1ANXX170419:8:1314:10021:16729/1 AAZ79478 100.0 33 101 657 2.61e-17 70.9 0.32673267326732675 HSM7J4M8 0.0502283105022831 AAZ79478 tetracycline__tet(Q) tetracycline 1.0 0.0502283105022831 1.5220700152207 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10113@CAVL1ANXX170419:8:1314:10676:16294/1 P70882 100.0 33 101 641 3.94e-19 75.9 0.32673267326732675 HSM7J4M8 0.0514820592823713 P70882 tetracycline__tet(Q) tetracycline 1.0 0.0514820592823713 1.5600624024960998 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@1011@CAVL1ANXX170419:7:1115:7271:55280/1 AAM48116 100.0 30 92 321 3.62e-15 64.3 0.32608695652173914 HSM7J4M8 0.09345794392523364 AAM48116 beta_lactam__CfxA2 beta_lactam 1.0 0.09345794392523364 3.115264797507788 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10129@CAVL1ANXX170419:8:1314:15456:57353/1 gb|ADP36409.1|ARO:3003730|Bifidobacteria 90.909 33 101 1107 1.93e-18 73.9 0.32673267326732675 HSM7J4M8 0.02981029810298103 gb|ADP36409.1|ARO:3003730|Bifidobacteria mupirocin__Bifidobacteria intrinsic ileS conferring resistance to mupirocin mupirocin 1.0 0.02981029810298103 0.903342366757001 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10135@CAVL1ANXX170419:8:1314:16585:71877/1 gi|1004359892|gb|AMP42199.1| 100.0 33 100 639 5.31e-16 67.0 0.33 HSM7J4M8 0.051643192488262914 gi|1004359892|gb|AMP42199.1| tetracycline__tet(W) tetracycline 1.0 0.051643192488262914 1.5649452269170578 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10150@CAVL1ANXX170419:8:1314:18900:3931/1 AAM48125 100.0 32 101 321 5.41e-16 66.6 0.31683168316831684 HSM7J4M8 0.09968847352024922 AAM48125 beta_lactam__CfxA2 beta_lactam 1.0 0.09968847352024922 3.115264797507788 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10151@CAVL1ANXX170419:8:1314:19523:91210/1 Q52360 100.0 27 81 641 1.42e-11 54.3 0.3333333333333333 HSM7J4M8 0.0421216848673947 Q52360 tetracycline__tet(Q) tetracycline 1.0 0.0421216848673947 1.5600624024960998 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10152@CAVL1ANXX170419:8:1314:19526:30733/1 gb|ADZ12699.1|ARO:3005091|RanA 93.939 33 101 258 7.63e-18 71.2 0.32673267326732675 HSM7J4M8 0.12790697674418605 gb|ADZ12699.1|ARO:3005091|RanA multidrug__RanA multidrug 1.0 0.12790697674418605 3.875968992248062 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10179@CAVL1ANXX170419:8:1314:5737:94563/1 AAM48125 100.0 33 101 321 1.52e-17 70.9 0.32673267326732675 HSM7J4M8 0.102803738317757 AAM48125 beta_lactam__CfxA2 beta_lactam 1.0 0.102803738317757 3.115264797507788 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10184@CAVL1ANXX170419:8:1314:7193:99506/1 P30898 96.97 33 101 296 3.92e-17 69.7 0.32673267326732675 HSM7J4M8 0.11148648648648649 P30898 beta_lactam__CblA-1 beta_lactam 1.0 0.11148648648648649 3.3783783783783785 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10186@CAVL1ANXX170419:8:1314:7812:76944/1 ABG81258 100.0 33 101 639 4.47e-18 72.8 0.32673267326732675 HSM7J4M8 0.051643192488262914 ABG81258 tetracycline__tet(W) tetracycline 1.0 0.051643192488262914 1.5649452269170578 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@1018@CAVL1ANXX170419:7:1115:9822:47166/1 M15332.gene.p01 96.97 33 101 244 1.1e-16 67.8 0.32673267326732675 HSM7J4M8 0.13524590163934427 M15332.gene.p01 macrolide-lincosamide-streptogramin__erm(G) macrolide-lincosamide-streptogramin 1.0 0.13524590163934427 4.098360655737705 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10196@CAVL1ANXX170419:8:1314:9707:25559/1 YP_002937728 100.0 33 101 289 4.19e-16 67.0 0.32673267326732675 HSM7J4M8 0.11418685121107267 YP_002937728 bacitracin__bacA bacitracin 1.0 0.11418685121107267 3.4602076124567476 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10200@CAVL1ANXX170419:8:1315:10876:4493/1 gb|AAF74725.1|ARO:3004659|Mef(En2) 100.0 32 99 401 1.01e-16 68.9 0.32323232323232326 HSM7J4M8 0.0798004987531172 gb|AAF74725.1|ARO:3004659|Mef(En2) macrolide-lincosamide-streptogramin__mef(En2) macrolide-lincosamide-streptogramin 1.0 0.0798004987531172 2.4937655860349124 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10228@CAVL1ANXX170419:8:1315:1769:51996/1 gb|AMP42147.1|ARO:3004442|tet(W/N/W) 100.0 33 101 639 1.77e-17 71.2 0.32673267326732675 HSM7J4M8 0.051643192488262914 gb|AMP42147.1|ARO:3004442|tet(W/N/W) tetracycline__tet(W/N/W) tetracycline 1.0 0.051643192488262914 1.5649452269170578 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@1022@CAVL1ANXX170419:7:1116:10770:71910/1 AAC37034 100.0 33 99 244 3.16e-18 72.0 0.3333333333333333 HSM7J4M8 0.13524590163934427 AAC37034 macrolide-lincosamide-streptogramin__erm(G) macrolide-lincosamide-streptogramin 1.0 0.13524590163934427 4.098360655737705 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10230@CAVL1ANXX170419:8:1315:18445:87159/1 gb|AAF74725.1|ARO:3004659|Mef(En2) 100.0 26 80 401 1.98e-11 53.5 0.325 HSM7J4M8 0.06483790523690773 gb|AAF74725.1|ARO:3004659|Mef(En2) macrolide-lincosamide-streptogramin__mef(En2) macrolide-lincosamide-streptogramin 1.0 0.06483790523690773 2.4937655860349124 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10246@CAVL1ANXX170419:8:1315:2959:6974/1 WP_000691721.1 100.0 33 101 639 2.82e-17 70.5 0.32673267326732675 HSM7J4M8 0.051643192488262914 WP_000691721.1 tetracycline__tet(W) tetracycline 1.0 0.051643192488262914 1.5649452269170578 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10247@CAVL1ANXX170419:8:1315:2983:70214/1 AAM48125 100.0 33 101 321 1.55e-17 70.9 0.32673267326732675 HSM7J4M8 0.102803738317757 AAM48125 beta_lactam__CfxA2 beta_lactam 1.0 0.102803738317757 3.115264797507788 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10250@CAVL1ANXX170419:8:1315:3829:25923/1 gi|104303742|gb|ABF72138.1| 100.0 33 101 639 1.92e-15 65.5 0.32673267326732675 HSM7J4M8 0.051643192488262914 gi|104303742|gb|ABF72138.1| tetracycline__tet(W) tetracycline 1.0 0.051643192488262914 1.5649452269170578 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10260@CAVL1ANXX170419:8:1315:6291:85992/1 gb|ADP36409.1|ARO:3003730|Bifidobacteria 96.97 33 101 1107 2.96e-16 67.8 0.32673267326732675 HSM7J4M8 0.02981029810298103 gb|ADP36409.1|ARO:3003730|Bifidobacteria mupirocin__Bifidobacteria intrinsic ileS conferring resistance to mupirocin mupirocin 1.0 0.02981029810298103 0.903342366757001 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10268@CAVL1ANXX170419:8:1315:8592:36603/1 CAG30567 100.0 33 101 639 6.78e-17 69.7 0.32673267326732675 HSM7J4M8 0.051643192488262914 CAG30567 tetracycline__tet(O) tetracycline 1.0 0.051643192488262914 1.5649452269170578 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10271@CAVL1ANXX170419:8:1315:9004:100773/1 gb|AAF74725.1|ARO:3004659|Mef(En2) 100.0 30 93 401 6.83e-14 60.8 0.3225806451612903 HSM7J4M8 0.07481296758104738 gb|AAF74725.1|ARO:3004659|Mef(En2) macrolide-lincosamide-streptogramin__mef(En2) macrolide-lincosamide-streptogramin 1.0 0.07481296758104738 2.4937655860349124 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10272@CAVL1ANXX170419:8:1315:9328:72579/1 AF118110.1.gene1.p01 100.0 33 101 321 7.3e-18 72.0 0.32673267326732675 HSM7J4M8 0.102803738317757 AF118110.1.gene1.p01 beta_lactam__CfxA2 beta_lactam 1.0 0.102803738317757 3.115264797507788 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10273@CAVL1ANXX170419:8:1315:9398:54240/1 gb|ADZ12700.1|ARO:3005090|RanB 81.25 32 101 253 2.47e-10 50.8 0.31683168316831684 HSM7J4M8 0.12648221343873517 gb|ADZ12700.1|ARO:3005090|RanB multidrug__RanB multidrug 1.0 0.12648221343873517 3.952569169960474 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10275@CAVL1ANXX170419:8:1316:10414:20968/1 gi|511019447|ref|WP_016273783.1| 100.0 33 101 296 5.95e-15 63.5 0.32673267326732675 HSM7J4M8 0.11148648648648649 gi|511019447|ref|WP_016273783.1| beta_lactam__CblA-1 beta_lactam 1.0 0.11148648648648649 3.3783783783783785 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10285@CAVL1ANXX170419:8:1316:12907:25816/1 gi|1028100289|ref|WP_063856424.1| 100.0 32 100 639 3.72e-18 73.2 0.32 HSM7J4M8 0.050078247261345854 gi|1028100289|ref|WP_063856424.1| tetracycline__tet(W) tetracycline 1.0 0.050078247261345854 1.5649452269170578 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10291@CAVL1ANXX170419:8:1316:14001:95599/1 AAZ79478 100.0 33 101 657 3.45e-16 67.4 0.32673267326732675 HSM7J4M8 0.0502283105022831 AAZ79478 tetracycline__tet(Q) tetracycline 1.0 0.0502283105022831 1.5220700152207 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10294@CAVL1ANXX170419:8:1316:14709:6531/1 gb|AAC74000.1|ARO:3003950|msbA 90.909 33 101 582 4.09e-16 67.4 0.32673267326732675 HSM7J4M8 0.05670103092783505 gb|AAC74000.1|ARO:3003950|msbA multidrug__msbA multidrug 1.0 0.05670103092783505 1.718213058419244 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10300@CAVL1ANXX170419:8:1316:15281:96519/1 gb|AAC75089.1|ARO:3003577|ugd 87.879 33 101 388 3.54e-18 73.2 0.32673267326732675 HSM7J4M8 0.08505154639175258 gb|AAC75089.1|ARO:3003577|ugd polymyxin__ugd polymyxin 1.0 0.08505154639175258 2.5773195876288657 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10308@CAVL1ANXX170419:8:1316:17638:85747/1 AAB51122 100.0 33 101 670 9.05e-20 77.8 0.32673267326732675 HSM7J4M8 0.049253731343283584 AAB51122 tetracycline__tet(Q) tetracycline 1.0 0.049253731343283584 1.4925373134328357 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10317@CAVL1ANXX170419:8:1316:19805:21132/1 AAZ79478 100.0 33 101 657 2.68e-16 67.8 0.32673267326732675 HSM7J4M8 0.0502283105022831 AAZ79478 tetracycline__tet(Q) tetracycline 1.0 0.0502283105022831 1.5220700152207 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@1031@CAVL1ANXX170419:7:1116:12595:100756/1 BAD46890 100.0 33 101 657 1.78e-16 68.6 0.32673267326732675 HSM7J4M8 0.0502283105022831 BAD46890 tetracycline__tet(Q) tetracycline 1.0 0.0502283105022831 1.5220700152207 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10321@CAVL1ANXX170419:8:1316:20762:9554/1 BAD46890 100.0 33 101 657 1.84e-19 77.0 0.32673267326732675 HSM7J4M8 0.0502283105022831 BAD46890 tetracycline__tet(Q) tetracycline 1.0 0.0502283105022831 1.5220700152207 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10323@CAVL1ANXX170419:8:1316:20974:99145/1 AF472622.2.gene1.p01 100.0 33 101 321 1.44e-17 71.2 0.32673267326732675 HSM7J4M8 0.102803738317757 AF472622.2.gene1.p01 beta_lactam__CfxA3 beta_lactam 1.0 0.102803738317757 3.115264797507788 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10328@CAVL1ANXX170419:8:1316:3559:50711/1 ABP89888 93.103 29 101 644 2.64e-13 59.3 0.2871287128712871 HSM7J4M8 0.04503105590062112 ABP89888 tetracycline__tet(M) tetracycline 1.0 0.04503105590062112 1.5527950310559007 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10332@CAVL1ANXX170419:8:1316:4678:49041/1 gb|AAF74725.1|ARO:3004659|Mef(En2) 100.0 33 101 401 8.2e-16 66.6 0.32673267326732675 HSM7J4M8 0.08229426433915212 gb|AAF74725.1|ARO:3004659|Mef(En2) macrolide-lincosamide-streptogramin__mef(En2) macrolide-lincosamide-streptogramin 1.0 0.08229426433915212 2.4937655860349124 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10334@CAVL1ANXX170419:8:1316:5398:18590/1 AAR29485 100.0 33 101 639 5.53e-17 69.7 0.32673267326732675 HSM7J4M8 0.051643192488262914 AAR29485 tetracycline__tet(O) tetracycline 1.0 0.051643192488262914 1.5649452269170578 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@1033@CAVL1ANXX170419:7:1116:13090:66581/1 CAX85496 96.97 33 101 639 4.77e-17 70.1 0.32673267326732675 HSM7J4M8 0.051643192488262914 CAX85496 tetracycline__tet(W) tetracycline 1.0 0.051643192488262914 1.5649452269170578 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10342@CAVL1ANXX170419:8:1316:9261:28515/1 P70882 100.0 33 101 641 1.93e-18 73.9 0.32673267326732675 HSM7J4M8 0.0514820592823713 P70882 tetracycline__tet(Q) tetracycline 1.0 0.0514820592823713 1.5600624024960998 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10351@CAVL1ANXX170419:8:2101:12641:72140/1 ZP_04055725 84.375 32 100 283 1.6e-12 57.0 0.32 HSM7J4M8 0.11307420494699646 ZP_04055725 bacitracin__bacA bacitracin 1.0 0.11307420494699646 3.53356890459364 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10353@CAVL1ANXX170419:8:2101:13329:27553/1 gb|AAF74725.1|ARO:3004659|Mef(En2) 100.0 33 101 401 8.12e-16 66.6 0.32673267326732675 HSM7J4M8 0.08229426433915212 gb|AAF74725.1|ARO:3004659|Mef(En2) macrolide-lincosamide-streptogramin__mef(En2) macrolide-lincosamide-streptogramin 1.0 0.08229426433915212 2.4937655860349124 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10354@CAVL1ANXX170419:8:2101:13494:29179/1 gb|AAF74725.1|ARO:3004659|Mef(En2) 100.0 29 89 401 2.86e-13 58.9 0.3258426966292135 HSM7J4M8 0.07231920199501247 gb|AAF74725.1|ARO:3004659|Mef(En2) macrolide-lincosamide-streptogramin__mef(En2) macrolide-lincosamide-streptogramin 1.0 0.07231920199501247 2.4937655860349124 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10360@CAVL1ANXX170419:8:2101:14127:31725/1 WP_002857791.1 96.97 33 101 639 2.55e-16 67.8 0.32673267326732675 HSM7J4M8 0.051643192488262914 WP_002857791.1 tetracycline__tet(O) tetracycline 1.0 0.051643192488262914 1.5649452269170578 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10366@CAVL1ANXX170419:8:2101:15490:5729/1 BAC77251 80.0 25 79 1051 4.08e-09 47.0 0.31645569620253167 HSM7J4M8 0.023786869647954328 BAC77251 multidrug__sdeY multidrug 0.3333333333333333 0.00792895654931811 0.3171582619727244 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10372@CAVL1ANXX170419:8:2101:16652:94976/1 gb|ADP36409.1|ARO:3003730|Bifidobacteria 100.0 33 101 1107 2.74e-18 73.6 0.32673267326732675 HSM7J4M8 0.02981029810298103 gb|ADP36409.1|ARO:3003730|Bifidobacteria mupirocin__Bifidobacteria intrinsic ileS conferring resistance to mupirocin mupirocin 1.0 0.02981029810298103 0.903342366757001 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10373@CAVL1ANXX170419:8:2101:16725:65148/1 U38243.1.gene1.p01 100.0 33 100 321 3.69e-16 67.0 0.33 HSM7J4M8 0.102803738317757 U38243.1.gene1.p01 beta_lactam__CfxA beta_lactam 1.0 0.102803738317757 3.115264797507788 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10379@CAVL1ANXX170419:8:2101:17730:26798/1 YP_523088 80.0 30 101 277 1.95e-09 48.5 0.297029702970297 HSM7J4M8 0.10830324909747292 YP_523088 bacitracin__bacA bacitracin 1.0 0.10830324909747292 3.6101083032490973 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10384@CAVL1ANXX170419:8:2101:19594:93083/1 gb|AAF74725.1|ARO:3004659|Mef(En2) 100.0 33 101 401 3.15e-15 64.7 0.32673267326732675 HSM7J4M8 0.08229426433915212 gb|AAF74725.1|ARO:3004659|Mef(En2) macrolide-lincosamide-streptogramin__mef(En2) macrolide-lincosamide-streptogramin 1.0 0.08229426433915212 2.4937655860349124 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10386@CAVL1ANXX170419:8:2101:1962:34200/1 gb|AAF74725.1|ARO:3004659|Mef(En2) 100.0 32 98 401 2.87e-16 67.8 0.32653061224489793 HSM7J4M8 0.0798004987531172 gb|AAF74725.1|ARO:3004659|Mef(En2) macrolide-lincosamide-streptogramin__mef(En2) macrolide-lincosamide-streptogramin 1.0 0.0798004987531172 2.4937655860349124 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10394@CAVL1ANXX170419:8:2101:2114:24248/1 AAM48125 100.0 33 101 321 3.24e-18 72.8 0.32673267326732675 HSM7J4M8 0.102803738317757 AAM48125 beta_lactam__CfxA2 beta_lactam 1.0 0.102803738317757 3.115264797507788 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@1039@CAVL1ANXX170419:7:1116:14215:55660/1 gb|ADP36409.1|ARO:3003730|Bifidobacteria 100.0 33 101 1107 1.55e-19 77.0 0.32673267326732675 HSM7J4M8 0.02981029810298103 gb|ADP36409.1|ARO:3003730|Bifidobacteria mupirocin__Bifidobacteria intrinsic ileS conferring resistance to mupirocin mupirocin 1.0 0.02981029810298103 0.903342366757001 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10419@CAVL1ANXX170419:8:2101:9822:42936/1 gb|AAD01868.1|ARO:3002867|dfrF 100.0 32 98 164 3.21e-18 70.5 0.32653061224489793 HSM7J4M8 0.1951219512195122 gb|AAD01868.1|ARO:3002867|dfrF trimethoprim__dfrF trimethoprim 1.0 0.1951219512195122 6.097560975609756 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10428@CAVL1ANXX170419:8:2102:12398:65615/1 ZP_04557016 100.0 33 101 657 2.18e-16 68.2 0.32673267326732675 HSM7J4M8 0.0502283105022831 ZP_04557016 tetracycline__tet(Q) tetracycline 1.0 0.0502283105022831 1.5220700152207 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10429@CAVL1ANXX170419:8:2102:12465:74058/1 P70882 100.0 32 100 641 4.97e-17 70.1 0.32 HSM7J4M8 0.0499219968798752 P70882 tetracycline__tet(Q) tetracycline 1.0 0.0499219968798752 1.5600624024960998 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10436@CAVL1ANXX170419:8:2102:14150:70480/1 CAD13485 100.0 33 101 639 6.03e-17 69.7 0.32673267326732675 HSM7J4M8 0.051643192488262914 CAD13485 tetracycline__tet(W) tetracycline 1.0 0.051643192488262914 1.5649452269170578 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10441@CAVL1ANXX170419:8:2102:1465:98204/1 AAA27431 100.0 33 101 266 7.28e-18 71.2 0.32673267326732675 HSM7J4M8 0.12406015037593984 AAA27431 macrolide-lincosamide-streptogramin__erm(F) macrolide-lincosamide-streptogramin 1.0 0.12406015037593984 3.7593984962406015 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10446@CAVL1ANXX170419:8:2102:15404:96717/1 gi|254967129|gb|ACT97610.1| 100.0 33 101 639 3.34e-19 76.3 0.32673267326732675 HSM7J4M8 0.051643192488262914 gi|254967129|gb|ACT97610.1| tetracycline__tet(W) tetracycline 1.0 0.051643192488262914 1.5649452269170578 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10462@CAVL1ANXX170419:8:2102:18826:89560/1 AAB51122 100.0 25 77 670 6.31e-11 52.0 0.3246753246753247 HSM7J4M8 0.03731343283582089 AAB51122 tetracycline__tet(Q) tetracycline 1.0 0.03731343283582089 1.4925373134328357 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10464@CAVL1ANXX170419:8:2102:2000:74673/1 Q52360 100.0 26 81 641 6.74e-12 55.1 0.32098765432098764 HSM7J4M8 0.0405616224648986 Q52360 tetracycline__tet(Q) tetracycline 1.0 0.0405616224648986 1.5600624024960998 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10469@CAVL1ANXX170419:8:2102:20786:34504/1 gb|AAF74725.1|ARO:3004659|Mef(En2) 100.0 33 101 401 2.72e-15 65.1 0.32673267326732675 HSM7J4M8 0.08229426433915212 gb|AAF74725.1|ARO:3004659|Mef(En2) macrolide-lincosamide-streptogramin__mef(En2) macrolide-lincosamide-streptogramin 1.0 0.08229426433915212 2.4937655860349124 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10473@CAVL1ANXX170419:8:2102:3329:84182/1 gb|AAF74725.1|ARO:3004659|Mef(En2) 100.0 33 100 401 8.96e-17 69.3 0.33 HSM7J4M8 0.08229426433915212 gb|AAF74725.1|ARO:3004659|Mef(En2) macrolide-lincosamide-streptogramin__mef(En2) macrolide-lincosamide-streptogramin 1.0 0.08229426433915212 2.4937655860349124 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10478@CAVL1ANXX170419:8:2102:3789:57280/1 gb|APB03219.1|ARO:3003986|TaeA 84.848 33 101 648 9.17e-15 63.5 0.32673267326732675 HSM7J4M8 0.05092592592592592 gb|APB03219.1|ARO:3003986|TaeA pleuromutilin_tiamulin__TaeA pleuromutilin_tiamulin 1.0 0.05092592592592592 1.5432098765432098 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10484@CAVL1ANXX170419:8:2102:5024:29234/1 gb|AAF74725.1|ARO:3004659|Mef(En2) 93.939 33 101 401 3.96e-14 61.6 0.32673267326732675 HSM7J4M8 0.08229426433915212 gb|AAF74725.1|ARO:3004659|Mef(En2) macrolide-lincosamide-streptogramin__mef(En2) macrolide-lincosamide-streptogramin 1.0 0.08229426433915212 2.4937655860349124 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10489@CAVL1ANXX170419:8:2102:5840:85120/1 AY485126.gene.p01 100.0 26 79 639 1.07e-11 54.3 0.3291139240506329 HSM7J4M8 0.0406885758998435 AY485126.gene.p01 tetracycline__tet(O/W) tetracycline 1.0 0.0406885758998435 1.5649452269170578 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10500@CAVL1ANXX170419:8:2102:8030:84156/1 gb|ADP36409.1|ARO:3003730|Bifidobacteria 86.667 30 92 1107 5.83e-15 63.9 0.32608695652173914 HSM7J4M8 0.02710027100271003 gb|ADP36409.1|ARO:3003730|Bifidobacteria mupirocin__Bifidobacteria intrinsic ileS conferring resistance to mupirocin mupirocin 1.0 0.02710027100271003 0.903342366757001 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10501@CAVL1ANXX170419:8:2102:8479:17608/1 gb|ADZ12700.1|ARO:3005090|RanB 84.848 33 101 253 2.51e-13 58.9 0.32673267326732675 HSM7J4M8 0.13043478260869565 gb|ADZ12700.1|ARO:3005090|RanB multidrug__RanB multidrug 1.0 0.13043478260869565 3.952569169960474 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10513@CAVL1ANXX170419:8:2103:12732:64547/1 FN594949.1.gene24.p01 100.0 28 85 640 3.74e-13 58.5 0.32941176470588235 HSM7J4M8 0.04375 FN594949.1.gene24.p01 tetracycline__tet(44) tetracycline 1.0 0.04375 1.5625 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10514@CAVL1ANXX170419:8:2103:13328:98394/1 Z21523.gene.p01 96.552 29 87 657 1.49e-14 62.8 0.3333333333333333 HSM7J4M8 0.0441400304414003 Z21523.gene.p01 tetracycline__tet(Q) tetracycline 1.0 0.0441400304414003 1.5220700152207 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10517@CAVL1ANXX170419:8:2103:14435:84844/1 ZP_03989103 100.0 29 90 639 1.78e-14 62.4 0.32222222222222224 HSM7J4M8 0.04538341158059468 ZP_03989103 tetracycline__tet(32) tetracycline 1.0 0.04538341158059468 1.5649452269170578 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@1051@CAVL1ANXX170419:7:1116:16548:53295/1 gb|AAF74725.1|ARO:3004659|Mef(En2) 100.0 33 101 401 8.12e-16 66.6 0.32673267326732675 HSM7J4M8 0.08229426433915212 gb|AAF74725.1|ARO:3004659|Mef(En2) macrolide-lincosamide-streptogramin__mef(En2) macrolide-lincosamide-streptogramin 1.0 0.08229426433915212 2.4937655860349124 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10524@CAVL1ANXX170419:8:2103:16740:84348/1 AAV37206 100.0 33 101 321 3.21e-17 70.1 0.32673267326732675 HSM7J4M8 0.102803738317757 AAV37206 beta_lactam__CfxA5 beta_lactam 1.0 0.102803738317757 3.115264797507788 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10531@CAVL1ANXX170419:8:2103:18518:6060/1 gi|983204316|ref|WP_060470352.1| 81.818 33 101 405 1.53e-11 54.3 0.32673267326732675 HSM7J4M8 0.08148148148148149 gi|983204316|ref|WP_060470352.1| macrolide-lincosamide-streptogramin__mel macrolide-lincosamide-streptogramin 1.0 0.08148148148148149 2.4691358024691357 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10535@CAVL1ANXX170419:8:2103:19290:67725/1 BAD46890 100.0 33 101 657 5.41e-15 64.3 0.32673267326732675 HSM7J4M8 0.0502283105022831 BAD46890 tetracycline__tet(Q) tetracycline 1.0 0.0502283105022831 1.5220700152207 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10538@CAVL1ANXX170419:8:2103:20166:76320/1 ZP_04055725 84.848 33 101 283 6.62e-14 60.8 0.32673267326732675 HSM7J4M8 0.1166077738515901 ZP_04055725 bacitracin__bacA bacitracin 1.0 0.1166077738515901 3.53356890459364 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10544@CAVL1ANXX170419:8:2103:2552:10242/1 AF472622.2.gene1.p01 96.97 33 101 321 7.35e-17 68.9 0.32673267326732675 HSM7J4M8 0.102803738317757 AF472622.2.gene1.p01 beta_lactam__CfxA3 beta_lactam 1.0 0.102803738317757 3.115264797507788 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10551@CAVL1ANXX170419:8:2103:4570:86818/1 M14730.gene.p01 100.0 33 101 266 5.17e-18 71.6 0.32673267326732675 HSM7J4M8 0.12406015037593984 M14730.gene.p01 macrolide-lincosamide-streptogramin__erm(F) macrolide-lincosamide-streptogramin 1.0 0.12406015037593984 3.7593984962406015 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10552@CAVL1ANXX170419:8:2103:4941:41693/1 P70882 100.0 33 101 641 2.21e-18 73.9 0.32673267326732675 HSM7J4M8 0.0514820592823713 P70882 tetracycline__tet(Q) tetracycline 1.0 0.0514820592823713 1.5600624024960998 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10556@CAVL1ANXX170419:8:2103:6322:54059/1 AAM48125 100.0 33 101 321 5.77e-17 69.3 0.32673267326732675 HSM7J4M8 0.102803738317757 AAM48125 beta_lactam__CfxA2 beta_lactam 1.0 0.102803738317757 3.115264797507788 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10568@CAVL1ANXX170419:8:2103:9384:19852/1 BAD46890 100.0 33 101 657 2.63e-17 70.9 0.32673267326732675 HSM7J4M8 0.0502283105022831 BAD46890 tetracycline__tet(Q) tetracycline 1.0 0.0502283105022831 1.5220700152207 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10569@CAVL1ANXX170419:8:2103:9417:90711/1 AAZ79478 100.0 33 101 657 2.68e-16 67.8 0.32673267326732675 HSM7J4M8 0.0502283105022831 AAZ79478 tetracycline__tet(Q) tetracycline 1.0 0.0502283105022831 1.5220700152207 28361.83513176316 +HSM7J4M8@HSM7J4M8_R1@10570@CAVL1ANXX170419:8:2103:9525:62852/1 AAM48116 100.0 33 101 321 2.25e-17 70.5 0.32673267326732675 HSM7J4M8 0.102803738317757 AAM48116 beta_lactam__CfxA2 beta_lactam 1.0 0.102803738317757 3.115264797507788 28361.83513176316
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/deeparg_hamronize.tsv Wed Aug 28 20:27:17 2024 +0000 @@ -0,0 +1,100 @@ +input_file_name gene_symbol gene_name reference_database_name reference_database_version reference_accession analysis_software_name analysis_software_version genetic_variation_type antimicrobial_agent coverage_percentage coverage_depth coverage_ratio drug_class input_gene_length input_gene_start input_gene_stop input_protein_length input_protein_start input_protein_stop input_sequence_id nucleotide_mutation nucleotide_mutation_interpretation predicted_phenotype predicted_phenotype_confidence_level amino_acid_mutation amino_acid_mutation_interpretation reference_gene_length reference_gene_start reference_gene_stop reference_protein_length reference_protein_start reference_protein_stop resistance_mechanism strand_orientation sequence_identity +HSM7J4M8 TETQ ZP_04557016|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 ZP_04557016 deeparg 1.0.2 gene_presence_detected tetracycline 191 223 CAVL1ANXX170419:8:1211:20929:16342/1 100.0 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 274 306 CAVL1ANXX170419:8:1211:20929:16342/2 100.0 +HSM7J4M8 UGD AAC75089.1|FEATURES|ugd|peptide|ugd deeparg_db 1 AAC75089.1 deeparg 1.0.2 gene_presence_detected peptide 242 274 CAW05ANXX170413:3:1311:9080:27889/2 87.9 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 452 484 CAVL1ANXX170419:7:1112:17911:9537/1 87.9 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 428 471 CAW05ANXX170413:3:2313:9964:68847/1 81.8 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 245 277 CAW05ANXX170413:4:2211:15535:39005/1 100.0 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 125 156 CAW05ANXX170413:3:1315:16625:39188/1 100.0 +HSM7J4M8 CLASS_A P30898|FEATURES|class_A|beta-lactam|class_A deeparg_db 1 P30898 deeparg 1.0.2 gene_presence_detected beta-lactam 168 214 CAW05ANXX170413:4:2110:17870:97415/1 100.0 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 1034 1066 CAVL1ANXX170419:7:2114:1131:86489/1 84.8 +HSM7J4M8 TETW CAO78565|FEATURES|tetW|tetracycline|tetW deeparg_db 1 CAO78565 deeparg 1.0.2 gene_presence_detected tetracycline 395 435 CAW05ANXX170413:2:2115:3176:4503/1 100.0 +HSM7J4M8 TETW AAL09826|FEATURES|tetW|tetracycline|tetW deeparg_db 1 AAL09826 deeparg 1.0.2 gene_presence_detected tetracycline 265 324 CAVL1ANXX170419:8:1111:1611:100037/1 91.7 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 448 480 CAVL1ANXX170419:7:1301:9203:5016/1 87.9 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 1036 1094 CAW05ANXX170413:4:2308:19209:54439/1 83.1 +HSM7J4M8 TETW gi:168258996:gb:ACA23181.1:|FEATURES|tetW|tetracycline|tetW deeparg_db 1 gi:168258996:gb:ACA23181.1: deeparg 1.0.2 gene_presence_detected tetracycline 528 560 CAW05ANXX170413:2:2204:11751:81368/2 100.0 +HSM7J4M8 TETW gi:168258996:gb:ACA23181.1:|FEATURES|tetW|tetracycline|tetW deeparg_db 1 gi:168258996:gb:ACA23181.1: deeparg 1.0.2 gene_presence_detected tetracycline 558 590 CAW05ANXX170413:2:2204:11751:81368/1 100.0 +HSM7J4M8 DFRF AAD01868.1|FEATURES|dfrF|diaminopyrimidine|dfrF deeparg_db 1 AAD01868.1 deeparg 1.0.2 gene_presence_detected diaminopyrimidine 1 45 CAW05ANXX170413:4:2304:5201:21397/1 100.0 +HSM7J4M8 EFRB CDO61516.1|FEATURES|efrB|multidrug|efrB deeparg_db 1 CDO61516.1 deeparg 1.0.2 gene_presence_detected multidrug 324 362 CAW05ANXX170413:4:2108:11625:97887/1 84.6 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 438 467 CAVL1ANXX170419:8:1216:14948:70047/1 90.0 +HSM7J4M8 TETW gi:168258996:gb:ACA23181.1:|FEATURES|tetW|tetracycline|tetW deeparg_db 1 gi:168258996:gb:ACA23181.1: deeparg 1.0.2 gene_presence_detected tetracycline 243 271 CAW05ANXX170413:3:2213:5573:28523/1 100.0 +HSM7J4M8 CLASS_A gi:511019447:ref:WP_016273783.1:|FEATURES|class_A|beta-lactam|class_A deeparg_db 1 gi:511019447:ref:WP_016273783.1: deeparg 1.0.2 gene_presence_detected beta-lactam 234 266 CAW05ANXX170413:4:2101:11889:11483/2 100.0 +HSM7J4M8 TETW ACA23187|FEATURES|tetW|tetracycline|tetW deeparg_db 1 ACA23187 deeparg 1.0.2 gene_presence_detected tetracycline 458 494 CAVL1ANXX170419:8:1306:4592:97549/1 100.0 +HSM7J4M8 TETW ACA23187|FEATURES|tetW|tetracycline|tetW deeparg_db 1 ACA23187 deeparg 1.0.2 gene_presence_detected tetracycline 250 282 CAW05ANXX170413:4:1203:5542:4495/2 100.0 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 84 116 CAW05ANXX170413:3:1315:16625:39188/2 100.0 +HSM7J4M8 TETW gi:168258996:gb:ACA23181.1:|FEATURES|tetW|tetracycline|tetW deeparg_db 1 gi:168258996:gb:ACA23181.1: deeparg 1.0.2 gene_presence_detected tetracycline 599 630 CAW05ANXX170413:1:2305:16937:74810/1 100.0 +HSM7J4M8 TETW ACA23187|FEATURES|tetW|tetracycline|tetW deeparg_db 1 ACA23187 deeparg 1.0.2 gene_presence_detected tetracycline 313 345 CAW05ANXX170413:4:1203:5542:4495/1 100.0 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 183 220 CAW05ANXX170413:2:1306:19124:85410/1 100.0 +HSM7J4M8 ERMF ZP_04055482|FEATURES|ermF|MLS|ermF deeparg_db 1 ZP_04055482 deeparg 1.0.2 gene_presence_detected MLS 135 183 CAVL1ANXX170419:8:2311:2698:4881/1 100.0 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 549 581 CAVL1ANXX170419:7:2101:11775:63407/1 100.0 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 1066 1098 CAW05ANXX170413:3:2307:19659:86083/2 84.8 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 348 386 CAW05ANXX170413:4:2301:11928:92463/1 100.0 +HSM7J4M8 TETW ABC18245|FEATURES|tetW|tetracycline|tetW deeparg_db 1 ABC18245 deeparg 1.0.2 gene_presence_detected tetracycline 479 502 CAW05ANXX170413:2:1213:3511:19878/1 100.0 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 566 598 CAW05ANXX170413:1:1112:3902:85304/2 84.8 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 268 300 CAW05ANXX170413:1:1101:13426:8340/2 100.0 +HSM7J4M8 CFXA2 AF118110.1.gene1.p01|FEATURES|CfxA2|beta-lactam|CfxA2 deeparg_db 1 AF118110.1.gene1.p01 deeparg 1.0.2 gene_presence_detected beta-lactam 216 252 CAVL1ANXX170419:7:1111:14132:96304/1 100.0 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 239 271 CAW05ANXX170413:1:1101:13426:8340/1 100.0 +HSM7J4M8 TETM AAR29970|FEATURES|tetM|tetracycline|tetM deeparg_db 1 AAR29970 deeparg 1.0.2 gene_presence_detected tetracycline 506 560 CAW05ANXX170413:3:2116:6868:46858/1 96.4 +HSM7J4M8 ERMF ZP_04055482|FEATURES|ermF|MLS|ermF deeparg_db 1 ZP_04055482 deeparg 1.0.2 gene_presence_detected MLS 46 95 CAW05ANXX170413:4:1115:19271:81085/1 98.0 +HSM7J4M8 CFXA2 AF118110.1.gene1.p01|FEATURES|CfxA2|beta-lactam|CfxA2 deeparg_db 1 AF118110.1.gene1.p01 deeparg 1.0.2 gene_presence_detected beta-lactam 192 224 CAW05ANXX170413:1:1110:9955:90492/2 100.0 +HSM7J4M8 CFXA2 AF118110.1.gene1.p01|FEATURES|CfxA2|beta-lactam|CfxA2 deeparg_db 1 AF118110.1.gene1.p01 deeparg 1.0.2 gene_presence_detected beta-lactam 225 257 CAW05ANXX170413:1:1110:9955:90492/1 100.0 +HSM7J4M8 CLASS_A gi:511019447:ref:WP_016273783.1:|FEATURES|class_A|beta-lactam|class_A deeparg_db 1 gi:511019447:ref:WP_016273783.1: deeparg 1.0.2 gene_presence_detected beta-lactam 59 88 CAW05ANXX170413:1:2104:12338:89489/1 100.0 +HSM7J4M8 ERMF Q02607|FEATURES|ermF|MLS|ermF deeparg_db 1 Q02607 deeparg 1.0.2 gene_presence_detected MLS 115 148 CAW05ANXX170413:4:2316:15733:89046/1 100.0 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 1011 1043 CAW05ANXX170413:2:2106:1304:36748/2 90.9 +HSM7J4M8 ERMF ZP_04055482|FEATURES|ermF|MLS|ermF deeparg_db 1 ZP_04055482 deeparg 1.0.2 gene_presence_detected MLS 1 32 CAVL1ANXX170419:7:2215:5172:88650/1 100.0 +HSM7J4M8 TETW ABC18245|FEATURES|tetW|tetracycline|tetW deeparg_db 1 ABC18245 deeparg 1.0.2 gene_presence_detected tetracycline 449 480 CAW05ANXX170413:2:2211:9373:48167/2 100.0 +HSM7J4M8 TETW ABC18245|FEATURES|tetW|tetracycline|tetW deeparg_db 1 ABC18245 deeparg 1.0.2 gene_presence_detected tetracycline 448 480 CAW05ANXX170413:2:2211:9373:48167/1 100.0 +HSM7J4M8 KASUGAMYCIN_RESISTANCE_PROTEIN_KSGA A7FMC1|FEATURES|kasugamycin_resistance_protein_ksgA|aminoglycoside|kasugamycin_resistance_protein_ksgA deeparg_db 1 A7FMC1 deeparg 1.0.2 gene_presence_detected aminoglycoside 108 139 CAW05ANXX170413:1:2204:10841:3109/2 87.5 +HSM7J4M8 TETW ACA23187|FEATURES|tetW|tetracycline|tetW deeparg_db 1 ACA23187 deeparg 1.0.2 gene_presence_detected tetracycline 91 123 CAVL1ANXX170419:7:1302:11559:33404/1 100.0 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 458 488 CAW05ANXX170413:1:1205:4684:84705/2 83.9 +HSM7J4M8 TETW ACA23187|FEATURES|tetW|tetracycline|tetW deeparg_db 1 ACA23187 deeparg 1.0.2 gene_presence_detected tetracycline 54 86 CAVL1ANXX170419:7:1302:11559:33404/2 100.0 +HSM7J4M8 TETA(46) AET10444.1|FEATURES|tetA(46)|tetracycline|tetA(46) deeparg_db 1 AET10444.1 deeparg 1.0.2 gene_presence_detected tetracycline 161 199 CAW05ANXX170413:4:2107:18308:23682/1 100.0 +HSM7J4M8 CFXA2 AF118110.1.gene1.p01|FEATURES|CfxA2|beta-lactam|CfxA2 deeparg_db 1 AF118110.1.gene1.p01 deeparg 1.0.2 gene_presence_detected beta-lactam 226 258 CAW05ANXX170413:2:1105:18339:28347/2 100.0 +HSM7J4M8 BACA YP_002937728|FEATURES|bacA|bacitracin|bacA deeparg_db 1 YP_002937728 deeparg 1.0.2 gene_presence_detected bacitracin 121 153 CAVL1ANXX170419:8:2302:5224:83125/2 100.0 +HSM7J4M8 BACA YP_002937728|FEATURES|bacA|bacitracin|bacA deeparg_db 1 YP_002937728 deeparg 1.0.2 gene_presence_detected bacitracin 165 197 CAVL1ANXX170419:8:2302:5224:83125/1 100.0 +HSM7J4M8 VANU DQ212986.1.gene3.p01|FEATURES|vanU|glycopeptide|vanU deeparg_db 1 DQ212986.1.gene3.p01 deeparg 1.0.2 gene_presence_detected glycopeptide 1 48 CAW05ANXX170413:4:2101:9750:49063/1 81.2 +HSM7J4M8 ERMF ZP_04055482|FEATURES|ermF|MLS|ermF deeparg_db 1 ZP_04055482 deeparg 1.0.2 gene_presence_detected MLS 1 31 CAW05ANXX170413:2:2107:8039:8913/1 100.0 +HSM7J4M8 PBP-1A YP_001292390|FEATURES|PBP-1A|beta-lactam|PBP-1A deeparg_db 1 YP_001292390 deeparg 1.0.2 gene_presence_detected beta-lactam 507 539 CAW05ANXX170413:4:1212:12020:16066/2 87.9 +HSM7J4M8 PBP-1A YP_001292390|FEATURES|PBP-1A|beta-lactam|PBP-1A deeparg_db 1 YP_001292390 deeparg 1.0.2 gene_presence_detected beta-lactam 554 586 CAW05ANXX170413:4:1212:12020:16066/1 93.9 +HSM7J4M8 CFXA2 AF118110.1.gene1.p01|FEATURES|CfxA2|beta-lactam|CfxA2 deeparg_db 1 AF118110.1.gene1.p01 deeparg 1.0.2 gene_presence_detected beta-lactam 91 123 CAW05ANXX170413:3:2205:7646:25632/1 97.0 +HSM7J4M8 CFXA2 AF118110.1.gene1.p01|FEATURES|CfxA2|beta-lactam|CfxA2 deeparg_db 1 AF118110.1.gene1.p01 deeparg 1.0.2 gene_presence_detected beta-lactam 52 84 CAW05ANXX170413:3:2205:7646:25632/2 100.0 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 177 216 CAW05ANXX170413:2:1208:17315:52804/1 100.0 +HSM7J4M8 BACA ZP_04528247|FEATURES|bacA|bacitracin|bacA deeparg_db 1 ZP_04528247 deeparg 1.0.2 gene_presence_detected bacitracin 5 66 CAW05ANXX170413:4:2216:5306:50848/1 80.6 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 768 808 CAW05ANXX170413:2:2112:12324:87930/1 85.4 +HSM7J4M8 ERMG M15332.gene.p01|FEATURES|ermG|MLS|ermG deeparg_db 1 M15332.gene.p01 deeparg 1.0.2 gene_presence_detected MLS 39 74 CAW05ANXX170413:3:2105:17340:67174/1 100.0 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 348 380 CAW05ANXX170413:4:1112:7078:80745/2 100.0 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 1035 1063 CAVL1ANXX170419:8:2213:17232:21560/1 89.7 +HSM7J4M8 ERMB gi:494752321:ref:WP_007487729.1:|FEATURES|ermB|MLS|ermB deeparg_db 1 gi:494752321:ref:WP_007487729.1: deeparg 1.0.2 gene_presence_detected MLS 100 132 CAW05ANXX170413:4:2201:13207:98133/1 100.0 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 744 782 CAVL1ANXX170419:7:2201:7806:78313/1 82.1 +HSM7J4M8 TETM AAR29970|FEATURES|tetM|tetracycline|tetM deeparg_db 1 AAR29970 deeparg 1.0.2 gene_presence_detected tetracycline 22 66 CAVL1ANXX170419:7:2109:18195:11451/1 95.6 +HSM7J4M8 LNUC AAY32951.1|FEATURES|lnuC|MLS|lnuC deeparg_db 1 AAY32951.1 deeparg 1.0.2 gene_presence_detected MLS 77 109 CAW05ANXX170413:4:2314:4602:75128/2 100.0 +HSM7J4M8 TETM AAR29970|FEATURES|tetM|tetracycline|tetM deeparg_db 1 AAR29970 deeparg 1.0.2 gene_presence_detected tetracycline 46 78 CAW05ANXX170413:3:1201:14144:58887/2 97.0 +HSM7J4M8 TETM AAR29970|FEATURES|tetM|tetracycline|tetM deeparg_db 1 AAR29970 deeparg 1.0.2 gene_presence_detected tetracycline 79 111 CAW05ANXX170413:3:1201:14144:58887/1 100.0 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 432 477 CAVL1ANXX170419:8:2306:18869:92753/1 91.3 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 1033 1065 CAW05ANXX170413:3:2110:20339:63933/2 84.8 +HSM7J4M8 CFXA2 AF118110.1.gene1.p01|FEATURES|CfxA2|beta-lactam|CfxA2 deeparg_db 1 AF118110.1.gene1.p01 deeparg 1.0.2 gene_presence_detected beta-lactam 190 222 CAW05ANXX170413:2:1303:5753:29418/1 100.0 +HSM7J4M8 CFXA2 AF118110.1.gene1.p01|FEATURES|CfxA2|beta-lactam|CfxA2 deeparg_db 1 AF118110.1.gene1.p01 deeparg 1.0.2 gene_presence_detected beta-lactam 257 289 CAW05ANXX170413:2:1303:5753:29418/2 100.0 +HSM7J4M8 TETW CAO78565|FEATURES|tetW|tetracycline|tetW deeparg_db 1 CAO78565 deeparg 1.0.2 gene_presence_detected tetracycline 398 450 CAW05ANXX170413:1:1211:13666:30369/1 100.0 +HSM7J4M8 KASUGAMYCIN_RESISTANCE_PROTEIN_KSGA A7FMC1|FEATURES|kasugamycin_resistance_protein_ksgA|aminoglycoside|kasugamycin_resistance_protein_ksgA deeparg_db 1 A7FMC1 deeparg 1.0.2 gene_presence_detected aminoglycoside 152 187 CAW05ANXX170413:2:1304:9650:95878/1 80.6 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 768 800 CAVL1ANXX170419:7:2204:4178:18230/2 87.9 +HSM7J4M8 TETW gi:168258996:gb:ACA23181.1:|FEATURES|tetW|tetracycline|tetW deeparg_db 1 gi:168258996:gb:ACA23181.1: deeparg 1.0.2 gene_presence_detected tetracycline 349 381 CAW05ANXX170413:3:1314:11295:28913/2 100.0 +HSM7J4M8 TETW gi:168258996:gb:ACA23181.1:|FEATURES|tetW|tetracycline|tetW deeparg_db 1 gi:168258996:gb:ACA23181.1: deeparg 1.0.2 gene_presence_detected tetracycline 315 347 CAW05ANXX170413:3:1314:11295:28913/1 100.0 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 150 189 CAW05ANXX170413:3:2205:5211:23750/1 97.5 +HSM7J4M8 TET32 ABV82118|FEATURES|tet32|tetracycline|tet32 deeparg_db 1 ABV82118 deeparg 1.0.2 gene_presence_detected tetracycline 133 165 CAVL1ANXX170419:7:1215:13452:55459/1 100.0 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 109 150 CAW05ANXX170413:1:1207:3793:26741/1 100.0 +HSM7J4M8 UGD AAC75089.1|FEATURES|ugd|peptide|ugd deeparg_db 1 AAC75089.1 deeparg 1.0.2 gene_presence_detected peptide 230 262 CAW05ANXX170413:4:2307:19282:72087/2 90.9 +HSM7J4M8 ERMF Q02607|FEATURES|ermF|MLS|ermF deeparg_db 1 Q02607 deeparg 1.0.2 gene_presence_detected MLS 179 235 CAW05ANXX170413:4:2209:12378:13125/1 100.0 +HSM7J4M8 CFXA2 AY769933.1.gene1.p01|FEATURES|CfxA2|beta-lactam|CfxA2 deeparg_db 1 AY769933.1.gene1.p01 deeparg 1.0.2 gene_presence_detected beta-lactam 145 174 CAW05ANXX170413:4:1109:11895:18811/1 100.0 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 432 463 CAVL1ANXX170419:7:1104:3594:54825/2 87.5 +HSM7J4M8 CFXA2 AF118110.1.gene1.p01|FEATURES|CfxA2|beta-lactam|CfxA2 deeparg_db 1 AF118110.1.gene1.p01 deeparg 1.0.2 gene_presence_detected beta-lactam 154 202 CAW05ANXX170413:4:2307:3068:73276/1 98.0 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 143 175 CAW05ANXX170413:4:1214:2819:98466/1 84.8 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 1066 1101 CAW05ANXX170413:1:1102:10487:59991/1 80.6 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 578 610 CAVL1ANXX170419:8:1106:3865:26466/1 100.0 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 578 610 CAVL1ANXX170419:8:1106:3865:26466/2 100.0 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 97 129 CAW05ANXX170413:3:1307:3879:36407/1 100.0 +HSM7J4M8 TETQ Z21523.gene.p01|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 Z21523.gene.p01 deeparg 1.0.2 gene_presence_detected tetracycline 21 53 CAW05ANXX170413:3:1307:3879:36407/2 100.0 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 1017 1049 CAW05ANXX170413:4:2210:5154:42720/1 93.9 +HSM7J4M8 TETQ ZP_04557016|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 ZP_04557016 deeparg 1.0.2 gene_presence_detected tetracycline 245 275 CAW05ANXX170413:4:2109:16067:23574/1 96.8 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 547 579 CAVL1ANXX170419:8:1310:19520:23144/1 100.0 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 786 817 CAW05ANXX170413:2:2307:7561:79956/1 96.9 +HSM7J4M8 TETQ Z21523.gene.p01|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 Z21523.gene.p01 deeparg 1.0.2 gene_presence_detected tetracycline 489 521 CAW05ANXX170413:3:2104:12736:98854/2 100.0
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/deeparg_hamronize_argnorm_results.tsv Wed Aug 28 20:27:17 2024 +0000 @@ -0,0 +1,100 @@ +input_file_name gene_symbol gene_name reference_database_name reference_database_version reference_accession analysis_software_name analysis_software_version genetic_variation_type antimicrobial_agent coverage_percentage coverage_depth coverage_ratio drug_class input_gene_length input_gene_start input_gene_stop input_protein_length input_protein_start input_protein_stop input_sequence_id nucleotide_mutation nucleotide_mutation_interpretation predicted_phenotype predicted_phenotype_confidence_level amino_acid_mutation amino_acid_mutation_interpretation reference_gene_length reference_gene_start reference_gene_stop reference_protein_length reference_protein_start reference_protein_stop resistance_mechanism strand_orientation sequence_identity ARO confers_resistance_to resistance_to_drug_classes +HSM7J4M8 TETQ ZP_04557016|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 ZP_04557016 deeparg 1.0.2 gene_presence_detected tetracycline 191 223 CAVL1ANXX170419:8:1211:20929:16342/1 100.0 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 274 306 CAVL1ANXX170419:8:1211:20929:16342/2 100.0 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 UGD AAC75089.1|FEATURES|ugd|peptide|ugd deeparg_db 1 AAC75089.1 deeparg 1.0.2 gene_presence_detected peptide 242 274 CAW05ANXX170413:3:1311:9080:27889/2 87.9 ARO:3003577 ARO:3000454 ARO:3000053 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 452 484 CAVL1ANXX170419:7:1112:17911:9537/1 87.9 ARO:3000501 ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 428 471 CAW05ANXX170413:3:2313:9964:68847/1 81.8 ARO:3000501 ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 245 277 CAW05ANXX170413:4:2211:15535:39005/1 100.0 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 125 156 CAW05ANXX170413:3:1315:16625:39188/1 100.0 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 CLASS_A P30898|FEATURES|class_A|beta-lactam|class_A deeparg_db 1 P30898 deeparg 1.0.2 gene_presence_detected beta-lactam 168 214 CAW05ANXX170413:4:2110:17870:97415/1 100.0 ARO:3002999 ARO:0000032,ARO:3004129 ARO:3000007,ARO:3000007 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 1034 1066 CAVL1ANXX170419:7:2114:1131:86489/1 84.8 ARO:3000501 ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 +HSM7J4M8 TETW CAO78565|FEATURES|tetW|tetracycline|tetW deeparg_db 1 CAO78565 deeparg 1.0.2 gene_presence_detected tetracycline 395 435 CAW05ANXX170413:2:2115:3176:4503/1 100.0 ARO:3000194 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 TETW AAL09826|FEATURES|tetW|tetracycline|tetW deeparg_db 1 AAL09826 deeparg 1.0.2 gene_presence_detected tetracycline 265 324 CAVL1ANXX170419:8:1111:1611:100037/1 91.7 ARO:3007124 ARO:0000051 ARO:3000050 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 448 480 CAVL1ANXX170419:7:1301:9203:5016/1 87.9 ARO:3000501 ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 1036 1094 CAW05ANXX170413:4:2308:19209:54439/1 83.1 ARO:3000501 ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 +HSM7J4M8 TETW gi:168258996:gb:ACA23181.1:|FEATURES|tetW|tetracycline|tetW deeparg_db 1 gi:168258996:gb:ACA23181.1: deeparg 1.0.2 gene_presence_detected tetracycline 528 560 CAW05ANXX170413:2:2204:11751:81368/2 100.0 ARO:3000194 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 TETW gi:168258996:gb:ACA23181.1:|FEATURES|tetW|tetracycline|tetW deeparg_db 1 gi:168258996:gb:ACA23181.1: deeparg 1.0.2 gene_presence_detected tetracycline 558 590 CAW05ANXX170413:2:2204:11751:81368/1 100.0 ARO:3000194 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 DFRF AAD01868.1|FEATURES|dfrF|diaminopyrimidine|dfrF deeparg_db 1 AAD01868.1 deeparg 1.0.2 gene_presence_detected diaminopyrimidine 1 45 CAW05ANXX170413:4:2304:5201:21397/1 100.0 ARO:3002867 ARO:3000188 ARO:3000171 +HSM7J4M8 EFRB CDO61516.1|FEATURES|efrB|multidrug|efrB deeparg_db 1 CDO61516.1 deeparg 1.0.2 gene_presence_detected multidrug 324 362 CAW05ANXX170413:4:2108:11625:97887/1 84.6 ARO:3003949 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 438 467 CAVL1ANXX170419:8:1216:14948:70047/1 90.0 ARO:3000501 ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 +HSM7J4M8 TETW gi:168258996:gb:ACA23181.1:|FEATURES|tetW|tetracycline|tetW deeparg_db 1 gi:168258996:gb:ACA23181.1: deeparg 1.0.2 gene_presence_detected tetracycline 243 271 CAW05ANXX170413:3:2213:5573:28523/1 100.0 ARO:3000194 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 CLASS_A gi:511019447:ref:WP_016273783.1:|FEATURES|class_A|beta-lactam|class_A deeparg_db 1 gi:511019447:ref:WP_016273783.1: deeparg 1.0.2 gene_presence_detected beta-lactam 234 266 CAW05ANXX170413:4:2101:11889:11483/2 100.0 ARO:3002999 ARO:0000032,ARO:3004129 ARO:3000007,ARO:3000007 +HSM7J4M8 TETW ACA23187|FEATURES|tetW|tetracycline|tetW deeparg_db 1 ACA23187 deeparg 1.0.2 gene_presence_detected tetracycline 458 494 CAVL1ANXX170419:8:1306:4592:97549/1 100.0 ARO:3000194 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 TETW ACA23187|FEATURES|tetW|tetracycline|tetW deeparg_db 1 ACA23187 deeparg 1.0.2 gene_presence_detected tetracycline 250 282 CAW05ANXX170413:4:1203:5542:4495/2 100.0 ARO:3000194 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 84 116 CAW05ANXX170413:3:1315:16625:39188/2 100.0 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 TETW gi:168258996:gb:ACA23181.1:|FEATURES|tetW|tetracycline|tetW deeparg_db 1 gi:168258996:gb:ACA23181.1: deeparg 1.0.2 gene_presence_detected tetracycline 599 630 CAW05ANXX170413:1:2305:16937:74810/1 100.0 ARO:3000194 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 TETW ACA23187|FEATURES|tetW|tetracycline|tetW deeparg_db 1 ACA23187 deeparg 1.0.2 gene_presence_detected tetracycline 313 345 CAW05ANXX170413:4:1203:5542:4495/1 100.0 ARO:3000194 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 183 220 CAW05ANXX170413:2:1306:19124:85410/1 100.0 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 ERMF ZP_04055482|FEATURES|ermF|MLS|ermF deeparg_db 1 ZP_04055482 deeparg 1.0.2 gene_presence_detected MLS 135 183 CAVL1ANXX170419:8:2311:2698:4881/1 100.0 ARO:3000498 ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 549 581 CAVL1ANXX170419:7:2101:11775:63407/1 100.0 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 1066 1098 CAW05ANXX170413:3:2307:19659:86083/2 84.8 ARO:3000501 ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 348 386 CAW05ANXX170413:4:2301:11928:92463/1 100.0 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 TETW ABC18245|FEATURES|tetW|tetracycline|tetW deeparg_db 1 ABC18245 deeparg 1.0.2 gene_presence_detected tetracycline 479 502 CAW05ANXX170413:2:1213:3511:19878/1 100.0 ARO:3000194 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 566 598 CAW05ANXX170413:1:1112:3902:85304/2 84.8 ARO:3000501 ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 268 300 CAW05ANXX170413:1:1101:13426:8340/2 100.0 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 CFXA2 AF118110.1.gene1.p01|FEATURES|CfxA2|beta-lactam|CfxA2 deeparg_db 1 AF118110.1.gene1.p01 deeparg 1.0.2 gene_presence_detected beta-lactam 216 252 CAVL1ANXX170419:7:1111:14132:96304/1 100.0 ARO:3003002 ARO:0000044 ARO:3000007 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 239 271 CAW05ANXX170413:1:1101:13426:8340/1 100.0 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 TETM AAR29970|FEATURES|tetM|tetracycline|tetM deeparg_db 1 AAR29970 deeparg 1.0.2 gene_presence_detected tetracycline 506 560 CAW05ANXX170413:3:2116:6868:46858/1 96.4 ARO:3000190 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 ERMF ZP_04055482|FEATURES|ermF|MLS|ermF deeparg_db 1 ZP_04055482 deeparg 1.0.2 gene_presence_detected MLS 46 95 CAW05ANXX170413:4:1115:19271:81085/1 98.0 ARO:3000498 ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 +HSM7J4M8 CFXA2 AF118110.1.gene1.p01|FEATURES|CfxA2|beta-lactam|CfxA2 deeparg_db 1 AF118110.1.gene1.p01 deeparg 1.0.2 gene_presence_detected beta-lactam 192 224 CAW05ANXX170413:1:1110:9955:90492/2 100.0 ARO:3003002 ARO:0000044 ARO:3000007 +HSM7J4M8 CFXA2 AF118110.1.gene1.p01|FEATURES|CfxA2|beta-lactam|CfxA2 deeparg_db 1 AF118110.1.gene1.p01 deeparg 1.0.2 gene_presence_detected beta-lactam 225 257 CAW05ANXX170413:1:1110:9955:90492/1 100.0 ARO:3003002 ARO:0000044 ARO:3000007 +HSM7J4M8 CLASS_A gi:511019447:ref:WP_016273783.1:|FEATURES|class_A|beta-lactam|class_A deeparg_db 1 gi:511019447:ref:WP_016273783.1: deeparg 1.0.2 gene_presence_detected beta-lactam 59 88 CAW05ANXX170413:1:2104:12338:89489/1 100.0 ARO:3002999 ARO:0000032,ARO:3004129 ARO:3000007,ARO:3000007 +HSM7J4M8 ERMF Q02607|FEATURES|ermF|MLS|ermF deeparg_db 1 Q02607 deeparg 1.0.2 gene_presence_detected MLS 115 148 CAW05ANXX170413:4:2316:15733:89046/1 100.0 ARO:3000498 ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 1011 1043 CAW05ANXX170413:2:2106:1304:36748/2 90.9 ARO:3000501 ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 +HSM7J4M8 ERMF ZP_04055482|FEATURES|ermF|MLS|ermF deeparg_db 1 ZP_04055482 deeparg 1.0.2 gene_presence_detected MLS 1 32 CAVL1ANXX170419:7:2215:5172:88650/1 100.0 ARO:3000498 ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 +HSM7J4M8 TETW ABC18245|FEATURES|tetW|tetracycline|tetW deeparg_db 1 ABC18245 deeparg 1.0.2 gene_presence_detected tetracycline 449 480 CAW05ANXX170413:2:2211:9373:48167/2 100.0 ARO:3000194 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 TETW ABC18245|FEATURES|tetW|tetracycline|tetW deeparg_db 1 ABC18245 deeparg 1.0.2 gene_presence_detected tetracycline 448 480 CAW05ANXX170413:2:2211:9373:48167/1 100.0 ARO:3000194 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 KASUGAMYCIN_RESISTANCE_PROTEIN_KSGA A7FMC1|FEATURES|kasugamycin_resistance_protein_ksgA|aminoglycoside|kasugamycin_resistance_protein_ksgA deeparg_db 1 A7FMC1 deeparg 1.0.2 gene_presence_detected aminoglycoside 108 139 CAW05ANXX170413:1:2204:10841:3109/2 87.5 ARO:3004595 ARO:0000006,ARO:0000066,ARO:3000583 ARO:0000000,ARO:0000017,ARO:0000026 +HSM7J4M8 TETW ACA23187|FEATURES|tetW|tetracycline|tetW deeparg_db 1 ACA23187 deeparg 1.0.2 gene_presence_detected tetracycline 91 123 CAVL1ANXX170419:7:1302:11559:33404/1 100.0 ARO:3000194 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 458 488 CAW05ANXX170413:1:1205:4684:84705/2 83.9 ARO:3000501 ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 +HSM7J4M8 TETW ACA23187|FEATURES|tetW|tetracycline|tetW deeparg_db 1 ACA23187 deeparg 1.0.2 gene_presence_detected tetracycline 54 86 CAVL1ANXX170419:7:1302:11559:33404/2 100.0 ARO:3000194 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 TETA(46) AET10444.1|FEATURES|tetA(46)|tetracycline|tetA(46) deeparg_db 1 AET10444.1 deeparg 1.0.2 gene_presence_detected tetracycline 161 199 CAW05ANXX170413:4:2107:18308:23682/1 100.0 ARO:3004032 +HSM7J4M8 CFXA2 AF118110.1.gene1.p01|FEATURES|CfxA2|beta-lactam|CfxA2 deeparg_db 1 AF118110.1.gene1.p01 deeparg 1.0.2 gene_presence_detected beta-lactam 226 258 CAW05ANXX170413:2:1105:18339:28347/2 100.0 ARO:3003002 ARO:0000044 ARO:3000007 +HSM7J4M8 BACA YP_002937728|FEATURES|bacA|bacitracin|bacA deeparg_db 1 YP_002937728 deeparg 1.0.2 gene_presence_detected bacitracin 121 153 CAVL1ANXX170419:8:2302:5224:83125/2 100.0 ARO:3002986 ARO:3000629,ARO:3000630,ARO:3000631 ARO:3000053,ARO:3000053,ARO:3000053 +HSM7J4M8 BACA YP_002937728|FEATURES|bacA|bacitracin|bacA deeparg_db 1 YP_002937728 deeparg 1.0.2 gene_presence_detected bacitracin 165 197 CAVL1ANXX170419:8:2302:5224:83125/1 100.0 ARO:3002986 ARO:3000629,ARO:3000630,ARO:3000631 ARO:3000053,ARO:3000053,ARO:3000053 +HSM7J4M8 VANU DQ212986.1.gene3.p01|FEATURES|vanU|glycopeptide|vanU deeparg_db 1 DQ212986.1.gene3.p01 deeparg 1.0.2 gene_presence_detected glycopeptide 1 48 CAW05ANXX170413:4:2101:9750:49063/1 81.2 ARO:3004253 ARO:3000081 ARO:3000081 +HSM7J4M8 ERMF ZP_04055482|FEATURES|ermF|MLS|ermF deeparg_db 1 ZP_04055482 deeparg 1.0.2 gene_presence_detected MLS 1 31 CAW05ANXX170413:2:2107:8039:8913/1 100.0 ARO:3000498 ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 +HSM7J4M8 PBP-1A YP_001292390|FEATURES|PBP-1A|beta-lactam|PBP-1A deeparg_db 1 YP_001292390 deeparg 1.0.2 gene_presence_detected beta-lactam 507 539 CAW05ANXX170413:4:1212:12020:16066/2 87.9 ARO:3007060 ARO:0000032,ARO:0000044,ARO:0000064,ARO:3000008 ARO:3000007,ARO:3000007,ARO:3000007,ARO:3000007 +HSM7J4M8 PBP-1A YP_001292390|FEATURES|PBP-1A|beta-lactam|PBP-1A deeparg_db 1 YP_001292390 deeparg 1.0.2 gene_presence_detected beta-lactam 554 586 CAW05ANXX170413:4:1212:12020:16066/1 93.9 ARO:3007060 ARO:0000032,ARO:0000044,ARO:0000064,ARO:3000008 ARO:3000007,ARO:3000007,ARO:3000007,ARO:3000007 +HSM7J4M8 CFXA2 AF118110.1.gene1.p01|FEATURES|CfxA2|beta-lactam|CfxA2 deeparg_db 1 AF118110.1.gene1.p01 deeparg 1.0.2 gene_presence_detected beta-lactam 91 123 CAW05ANXX170413:3:2205:7646:25632/1 97.0 ARO:3003002 ARO:0000044 ARO:3000007 +HSM7J4M8 CFXA2 AF118110.1.gene1.p01|FEATURES|CfxA2|beta-lactam|CfxA2 deeparg_db 1 AF118110.1.gene1.p01 deeparg 1.0.2 gene_presence_detected beta-lactam 52 84 CAW05ANXX170413:3:2205:7646:25632/2 100.0 ARO:3003002 ARO:0000044 ARO:3000007 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 177 216 CAW05ANXX170413:2:1208:17315:52804/1 100.0 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 BACA ZP_04528247|FEATURES|bacA|bacitracin|bacA deeparg_db 1 ZP_04528247 deeparg 1.0.2 gene_presence_detected bacitracin 5 66 CAW05ANXX170413:4:2216:5306:50848/1 80.6 ARO:3002986 ARO:3000629,ARO:3000630,ARO:3000631 ARO:3000053,ARO:3000053,ARO:3000053 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 768 808 CAW05ANXX170413:2:2112:12324:87930/1 85.4 ARO:3000501 ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 +HSM7J4M8 ERMG M15332.gene.p01|FEATURES|ermG|MLS|ermG deeparg_db 1 M15332.gene.p01 deeparg 1.0.2 gene_presence_detected MLS 39 74 CAW05ANXX170413:3:2105:17340:67174/1 100.0 ARO:3000522 ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 348 380 CAW05ANXX170413:4:1112:7078:80745/2 100.0 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 1035 1063 CAVL1ANXX170419:8:2213:17232:21560/1 89.7 ARO:3000501 ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 +HSM7J4M8 ERMB gi:494752321:ref:WP_007487729.1:|FEATURES|ermB|MLS|ermB deeparg_db 1 gi:494752321:ref:WP_007487729.1: deeparg 1.0.2 gene_presence_detected MLS 100 132 CAW05ANXX170413:4:2201:13207:98133/1 100.0 ARO:3000375 ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 744 782 CAVL1ANXX170419:7:2201:7806:78313/1 82.1 ARO:3000501 ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 +HSM7J4M8 TETM AAR29970|FEATURES|tetM|tetracycline|tetM deeparg_db 1 AAR29970 deeparg 1.0.2 gene_presence_detected tetracycline 22 66 CAVL1ANXX170419:7:2109:18195:11451/1 95.6 ARO:3000190 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 LNUC AAY32951.1|FEATURES|lnuC|MLS|lnuC deeparg_db 1 AAY32951.1 deeparg 1.0.2 gene_presence_detected MLS 77 109 CAW05ANXX170413:4:2314:4602:75128/2 100.0 ARO:3002837 ARO:0000046 ARO:0000017 +HSM7J4M8 TETM AAR29970|FEATURES|tetM|tetracycline|tetM deeparg_db 1 AAR29970 deeparg 1.0.2 gene_presence_detected tetracycline 46 78 CAW05ANXX170413:3:1201:14144:58887/2 97.0 ARO:3000190 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 TETM AAR29970|FEATURES|tetM|tetracycline|tetM deeparg_db 1 AAR29970 deeparg 1.0.2 gene_presence_detected tetracycline 79 111 CAW05ANXX170413:3:1201:14144:58887/1 100.0 ARO:3000190 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 432 477 CAVL1ANXX170419:8:2306:18869:92753/1 91.3 ARO:3000501 ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 1033 1065 CAW05ANXX170413:3:2110:20339:63933/2 84.8 ARO:3000501 ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 +HSM7J4M8 CFXA2 AF118110.1.gene1.p01|FEATURES|CfxA2|beta-lactam|CfxA2 deeparg_db 1 AF118110.1.gene1.p01 deeparg 1.0.2 gene_presence_detected beta-lactam 190 222 CAW05ANXX170413:2:1303:5753:29418/1 100.0 ARO:3003002 ARO:0000044 ARO:3000007 +HSM7J4M8 CFXA2 AF118110.1.gene1.p01|FEATURES|CfxA2|beta-lactam|CfxA2 deeparg_db 1 AF118110.1.gene1.p01 deeparg 1.0.2 gene_presence_detected beta-lactam 257 289 CAW05ANXX170413:2:1303:5753:29418/2 100.0 ARO:3003002 ARO:0000044 ARO:3000007 +HSM7J4M8 TETW CAO78565|FEATURES|tetW|tetracycline|tetW deeparg_db 1 CAO78565 deeparg 1.0.2 gene_presence_detected tetracycline 398 450 CAW05ANXX170413:1:1211:13666:30369/1 100.0 ARO:3000194 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 KASUGAMYCIN_RESISTANCE_PROTEIN_KSGA A7FMC1|FEATURES|kasugamycin_resistance_protein_ksgA|aminoglycoside|kasugamycin_resistance_protein_ksgA deeparg_db 1 A7FMC1 deeparg 1.0.2 gene_presence_detected aminoglycoside 152 187 CAW05ANXX170413:2:1304:9650:95878/1 80.6 ARO:3004595 ARO:0000006,ARO:0000066,ARO:3000583 ARO:0000000,ARO:0000017,ARO:0000026 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 768 800 CAVL1ANXX170419:7:2204:4178:18230/2 87.9 ARO:3000501 ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 +HSM7J4M8 TETW gi:168258996:gb:ACA23181.1:|FEATURES|tetW|tetracycline|tetW deeparg_db 1 gi:168258996:gb:ACA23181.1: deeparg 1.0.2 gene_presence_detected tetracycline 349 381 CAW05ANXX170413:3:1314:11295:28913/2 100.0 ARO:3000194 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 TETW gi:168258996:gb:ACA23181.1:|FEATURES|tetW|tetracycline|tetW deeparg_db 1 gi:168258996:gb:ACA23181.1: deeparg 1.0.2 gene_presence_detected tetracycline 315 347 CAW05ANXX170413:3:1314:11295:28913/1 100.0 ARO:3000194 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 150 189 CAW05ANXX170413:3:2205:5211:23750/1 97.5 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 TET32 ABV82118|FEATURES|tet32|tetracycline|tet32 deeparg_db 1 ABV82118 deeparg 1.0.2 gene_presence_detected tetracycline 133 165 CAVL1ANXX170419:7:1215:13452:55459/1 100.0 ARO:3000196 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 109 150 CAW05ANXX170413:1:1207:3793:26741/1 100.0 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 UGD AAC75089.1|FEATURES|ugd|peptide|ugd deeparg_db 1 AAC75089.1 deeparg 1.0.2 gene_presence_detected peptide 230 262 CAW05ANXX170413:4:2307:19282:72087/2 90.9 ARO:3003577 ARO:3000454 ARO:3000053 +HSM7J4M8 ERMF Q02607|FEATURES|ermF|MLS|ermF deeparg_db 1 Q02607 deeparg 1.0.2 gene_presence_detected MLS 179 235 CAW05ANXX170413:4:2209:12378:13125/1 100.0 ARO:3000498 ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 +HSM7J4M8 CFXA2 AY769933.1.gene1.p01|FEATURES|CfxA2|beta-lactam|CfxA2 deeparg_db 1 AY769933.1.gene1.p01 deeparg 1.0.2 gene_presence_detected beta-lactam 145 174 CAW05ANXX170413:4:1109:11895:18811/1 100.0 ARO:3003005 ARO:0000044 ARO:3000007 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 432 463 CAVL1ANXX170419:7:1104:3594:54825/2 87.5 ARO:3000501 ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 +HSM7J4M8 CFXA2 AF118110.1.gene1.p01|FEATURES|CfxA2|beta-lactam|CfxA2 deeparg_db 1 AF118110.1.gene1.p01 deeparg 1.0.2 gene_presence_detected beta-lactam 154 202 CAW05ANXX170413:4:2307:3068:73276/1 98.0 ARO:3003002 ARO:0000044 ARO:3000007 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 143 175 CAW05ANXX170413:4:1214:2819:98466/1 84.8 ARO:3000501 ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 1066 1101 CAW05ANXX170413:1:1102:10487:59991/1 80.6 ARO:3000501 ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 578 610 CAVL1ANXX170419:8:1106:3865:26466/1 100.0 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 578 610 CAVL1ANXX170419:8:1106:3865:26466/2 100.0 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 97 129 CAW05ANXX170413:3:1307:3879:36407/1 100.0 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 TETQ Z21523.gene.p01|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 Z21523.gene.p01 deeparg 1.0.2 gene_presence_detected tetracycline 21 53 CAW05ANXX170413:3:1307:3879:36407/2 100.0 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 1017 1049 CAW05ANXX170413:4:2210:5154:42720/1 93.9 ARO:3000501 ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 +HSM7J4M8 TETQ ZP_04557016|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 ZP_04557016 deeparg 1.0.2 gene_presence_detected tetracycline 245 275 CAW05ANXX170413:4:2109:16067:23574/1 96.8 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 TETQ BAD46890|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 BAD46890 deeparg 1.0.2 gene_presence_detected tetracycline 547 579 CAVL1ANXX170419:8:1310:19520:23144/1 100.0 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +HSM7J4M8 RPOB2 BAD59497.1|FEATURES|rpoB2|multidrug|rpoB2 deeparg_db 1 BAD59497.1 deeparg 1.0.2 gene_presence_detected multidrug 786 817 CAW05ANXX170413:2:2307:7561:79956/1 96.9 ARO:3000501 ARO:3000169,ARO:3000517,ARO:3000530,ARO:3000534 ARO:3000157,ARO:3000157,ARO:3000157,ARO:3000157 +HSM7J4M8 TETQ Z21523.gene.p01|FEATURES|tetQ|tetracycline|tetQ deeparg_db 1 Z21523.gene.p01 deeparg 1.0.2 gene_presence_detected tetracycline 489 521 CAW05ANXX170413:3:2104:12736:98854/2 100.0 ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/groot-resfinder-results.tsv Wed Aug 28 20:27:17 2024 +0000 @@ -0,0 +1,29 @@ +0 1 2 3 ARO confers_resistance_to resistance_to_drug_classes +erm(G)_1_M15332 70 735 240M19D121M99D173M83D ARO:3000522 ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 +erm(B)_15_U48430 107 753 11D287M63D196M22D89M85D ARO:3000375 ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 +erm(B)_6_AF242872 155 747 11D299M51D312M74D ARO:3000375 ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 +erm(B)_21_U35228 125 738 53D163M145D363M14D ARO:3000375 ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 +erm(B)_10_U86375 143 738 11D205M145D363M14D ARO:3000375 ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 +erm(B)_11_M19270 112 738 11D205M2D73M70D127M12D224M14D ARO:3000375 ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 +lnu(C)_1_AY928180 41 495 51D277M14D148M5D ARO:3002837 ARO:0000046 ARO:0000017 +erm(B)_2_K00551 126 738 53D143M28D158M36D306M14D ARO:3000375 ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 +tet(O)_2_M20925 73 1920 213D283M62D361M118D109M23D750M1D ARO:3000190 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +erm(B)_18_X66468 125 762 77D163M145D363M14D ARO:3000375 ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 +tet(Q)_2_X58717 218 1926 1D179M21D149M30D461M163D323M44D102M32D124M163D111M23D ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +tet(O)_3_Y07780 56 1920 213D193M58D171M66D113M138D194M105D112M59D251M77D169M1D ARO:3000190 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +erm(F)_2_M17124 36 801 11D358M35D103M137D101M56D ARO:3000498 ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 +tet(W)_5_AJ427421 111 1920 3D1682M47D171M17D +tetO_4_AIOQ01000025 64 1920 1D169M43D656M300D571M44D135M1D +erm(B)_9_AF299292 164 738 11D205M8D500M14D ARO:3000375 ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 +erm(B)_7_AF368302 146 711 11D287M63D312M38D ARO:3000375 ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 +erm(F)_3_M17808 38 801 11D358M35D103M57D181M56D ARO:3000498 ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 +tet(W)_6_FN396364 68 1920 3D634M36D576M22D251M398D +tet(O)_1_M18896 66 1920 1D169M43D422M63D171M300D750M1D ARO:3000190 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +ant(6)-Ia_3_KF864551 407 867 1D854M12D ARO:3002629 ARO:0000040 ARO:0000016 +tet(Q)_3_U73497 293 2013 13D495M62D267M274D238M70D117M17D124M336D ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +tet(Q)_4_Z21523 294 1974 13D495M62D267M58D71M145D238M70D117M17D124M297D ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +erm(B)_1_JN899585 163 738 11D287M63D363M14D ARO:3000375 ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 +tet(W)_4_AJ427422 127 1920 3D1900M17D +erm(B)_12_U18931 198 738 11D713M14D ARO:3000375 ARO:0000006,ARO:0000027,ARO:0000046,ARO:0000057,ARO:0000065,ARO:0000066,ARO:3000145,ARO:3000156,ARO:3000158,ARO:3000176,ARO:3000583,ARO:3000584,ARO:3000669,ARO:3000672,ARO:3000673,ARO:3000674,ARO:3000675,ARO:3000677,ARO:3000678,ARO:3000679,ARO:3000680,ARO:3000681,ARO:3000682,ARO:3000867 ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000000,ARO:0000017,ARO:0000017,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026,ARO:0000026 +tet(W)_1_DQ060146 120 1920 3D1018M49D833M17D ARO:3000194 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050 +tet(Q)_1_L33696 2132 1926 1D708M3D334M2D874M4D ARO:3000191 ARO:0000051,ARO:0000069,ARO:3000152,ARO:3000528,ARO:3000667,ARO:3000668 ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050,ARO:3000050
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/resfinder_PSM7J199_R2.report Wed Aug 28 20:27:17 2024 +0000 @@ -0,0 +1,28 @@ +erm(G)_1_M15332 70 735 240M19D121M99D173M83D +erm(B)_15_U48430 107 753 11D287M63D196M22D89M85D +erm(B)_6_AF242872 155 747 11D299M51D312M74D +erm(B)_21_U35228 125 738 53D163M145D363M14D +erm(B)_10_U86375 143 738 11D205M145D363M14D +erm(B)_11_M19270 112 738 11D205M2D73M70D127M12D224M14D +lnu(C)_1_AY928180 41 495 51D277M14D148M5D +erm(B)_2_K00551 126 738 53D143M28D158M36D306M14D +tet(O)_2_M20925 73 1920 213D283M62D361M118D109M23D750M1D +erm(B)_18_X66468 125 762 77D163M145D363M14D +tet(Q)_2_X58717 218 1926 1D179M21D149M30D461M163D323M44D102M32D124M163D111M23D +tet(O)_3_Y07780 56 1920 213D193M58D171M66D113M138D194M105D112M59D251M77D169M1D +erm(F)_2_M17124 36 801 11D358M35D103M137D101M56D +tet(W)_5_AJ427421 111 1920 3D1682M47D171M17D +tetO_4_AIOQ01000025 64 1920 1D169M43D656M300D571M44D135M1D +erm(B)_9_AF299292 164 738 11D205M8D500M14D +erm(B)_7_AF368302 146 711 11D287M63D312M38D +erm(F)_3_M17808 38 801 11D358M35D103M57D181M56D +tet(W)_6_FN396364 68 1920 3D634M36D576M22D251M398D +tet(O)_1_M18896 66 1920 1D169M43D422M63D171M300D750M1D +ant(6)-Ia_3_KF864551 407 867 1D854M12D +tet(Q)_3_U73497 293 2013 13D495M62D267M274D238M70D117M17D124M336D +tet(Q)_4_Z21523 294 1974 13D495M62D267M58D71M145D238M70D117M17D124M297D +erm(B)_1_JN899585 163 738 11D287M63D363M14D +tet(W)_4_AJ427422 127 1920 3D1900M17D +erm(B)_12_U18931 198 738 11D713M14D +tet(W)_1_DQ060146 120 1920 3D1018M49D833M17D +tet(Q)_1_L33696 2132 1926 1D708M3D334M2D874M4D