Mercurial > repos > iuc > arriba

comparison arriba.xml @ 5:01ccd366690d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/arriba commit 3a528b3f87cff585baf4abb8ebe0be95a24044ea
author iuc
date Wed, 25 Oct 2023 08:24:37 +0000
parents f6b8b38636a4
children 45c2ec061cf9
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4:3d61a698e5e1 5:01ccd366690d
470 </test> 470 </test>
471 <!-- Test 2 - From exisitng BAM with protein_domains and visualization --> 471 <!-- Test 2 - From exisitng BAM with protein_domains and visualization -->
472 <test expect_num_outputs="4"> 472 <test expect_num_outputs="4">
473 <param name="input" ftype="sam" value="Aligned.out.sam"/> 473 <param name="input" ftype="sam" value="Aligned.out.sam"/>
474 <conditional name="genome"> 474 <conditional name="genome">
475 <param name="genome_source" value="history"/> 475 <param name="genome_source" value="cached"/>
476 <param name="assembly" ftype="fasta" value="genome.fasta.gz"/> 476 <param name="ref_file" value="genome_id"/>
477 </conditional> 477 </conditional>
478 <conditional name="genome_gtf"> 478 <conditional name="genome_gtf">
479 <param name="gtf_source" value="history"/> 479 <param name="gtf_source" value="history"/>
480 <param name="annotation" ftype="gtf" value="genome.gtf.gz"/> 480 <param name="annotation" ftype="gtf" value="genome.gtf.gz"/>
481 </conditional> 481 </conditional>