Mercurial > repos > iuc > arriba_draw_fusions
view tool-data/all_fasta.loc.sample @ 6:7acb00fc980a draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/arriba commit 26aa67fb926f54dfda456f8e25b3c3a21aa63685
author | iuc |
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date | Wed, 25 Sep 2024 15:30:11 +0000 |
parents | 2d4e3aff9dc7 |
children |
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#This file lists the locations and dbkeys of all the fasta files #under the "genome" directory (a directory that contains a directory #for each build). The script extract_fasta.py will generate the file #all_fasta.loc. This file has the format (white space characters are #TAB characters): # #<unique_build_id> <dbkey> <display_name> <file_path> # #So, all_fasta.loc could look something like this: # #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa #hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa # #Your all_fasta.loc file should contain an entry for each individual #fasta file. So there will be multiple fasta files for each build, #such as with hg19 above. #