Mercurial > repos > iuc > art
comparison tool_dependencies.xml @ 0:b98d6fffd00b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/art commit 2b8fe4bffea74c80e20d2d4d0c426cc1631fc05f
author | iuc |
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date | Thu, 11 Jun 2015 11:51:06 -0400 |
parents | |
children | a12ce5668966 |
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1 <?xml version="1.0"?> | |
2 <tool_dependency> | |
3 <package name="package_gsl_1_16" version="1.16"> | |
4 <repository changeset_revision="4391a79f86fa" name="package_gsl_1_16" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
5 </package> | |
6 <package name="art" version="2014_11_03"> | |
7 <install version="1.0"> | |
8 <actions> | |
9 <action type="download_by_url">http://www.niehs.nih.gov/research/resources/assets/docs/artsrcvanillaicecream031114linuxtgz.tgz</action> | |
10 <action type="set_environment_for_install"> | |
11 <repository changeset_revision="4391a79f86fa" name="package_gsl_1_16" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | |
12 <package name="gsl" version="1.16" /> | |
13 </repository> | |
14 </action> | |
15 <action type="autoconf" /> | |
16 <action type="set_environment"> | |
17 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin/</environment_variable> | |
18 </action> | |
19 </actions> | |
20 </install> | |
21 <readme>ART is a set of simulation tools to generate synthetic next-generation | |
22 sequencing reads. ART simulates sequencing reads by mimicking real | |
23 sequencing process with empirical error models or quality profiles summarized | |
24 from large recalibrated sequencing data. ART can also simulate reads using user | |
25 own read error model or quality profiles. ART supports simulation of | |
26 single-end, paired-end/mate-pair reads of three major commercial | |
27 next-generation sequencing platforms: Illumina's Solexa, Roche's 454 and | |
28 Applied Biosystems' SOLiD. ART can be used to test or benchmark a variety | |
29 of method or tools for next-generation sequencing data analysis, including | |
30 read alignment, de novo assembly, SNP and structure variation discovery. | |
31 ART was used as a primary tool for the simulation study of the 1000 Genomes | |
32 Project . ART is implemented in C++ with optimized algorithms and is highly | |
33 efficient in read simulation. ART outputs reads in the FASTQ format, and | |
34 alignments in the ALN format. ART can also generate alignments in the SAM | |
35 alignment or UCSC BED file format. | |
36 </readme> | |
37 </package> | |
38 </tool_dependency> |