Mercurial > repos > iuc > art
diff tool_dependencies.xml @ 0:b98d6fffd00b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/art commit 2b8fe4bffea74c80e20d2d4d0c426cc1631fc05f
author | iuc |
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date | Thu, 11 Jun 2015 11:51:06 -0400 |
parents | |
children | a12ce5668966 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Thu Jun 11 11:51:06 2015 -0400 @@ -0,0 +1,38 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="package_gsl_1_16" version="1.16"> + <repository changeset_revision="4391a79f86fa" name="package_gsl_1_16" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="art" version="2014_11_03"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://www.niehs.nih.gov/research/resources/assets/docs/artsrcvanillaicecream031114linuxtgz.tgz</action> + <action type="set_environment_for_install"> + <repository changeset_revision="4391a79f86fa" name="package_gsl_1_16" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="gsl" version="1.16" /> + </repository> + </action> + <action type="autoconf" /> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin/</environment_variable> + </action> + </actions> + </install> + <readme>ART is a set of simulation tools to generate synthetic next-generation +sequencing reads. ART simulates sequencing reads by mimicking real +sequencing process with empirical error models or quality profiles summarized +from large recalibrated sequencing data. ART can also simulate reads using user +own read error model or quality profiles. ART supports simulation of +single-end, paired-end/mate-pair reads of three major commercial +next-generation sequencing platforms: Illumina's Solexa, Roche's 454 and +Applied Biosystems' SOLiD. ART can be used to test or benchmark a variety +of method or tools for next-generation sequencing data analysis, including +read alignment, de novo assembly, SNP and structure variation discovery. +ART was used as a primary tool for the simulation study of the 1000 Genomes +Project . ART is implemented in C++ with optimized algorithms and is highly +efficient in read simulation. ART outputs reads in the FASTQ format, and +alignments in the ALN format. ART can also generate alignments in the SAM +alignment or UCSC BED file format. +</readme> + </package> +</tool_dependency>