Mercurial > repos > iuc > bakta

annotate test-data/TEST_6/TEST_6.gbff @ 6:92eee5f31117 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit fe9aabe924f278694d20b82169edacdb3e91eb49
author iuc
date Sun, 11 Feb 2024 00:56:12 +0000
parents 3f0aa1b3e816
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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6
92eee5f31117 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit fe9aabe924f278694d20b82169edacdb3e91eb49
iuc
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1 LOCUS contig_1 1330 bp DNA circular BCT 11-FEB-2024
4
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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2 DEFINITION plasmid unnamed1, complete sequence.
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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3 ACCESSION contig_1
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
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4 VERSION contig_1
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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5 KEYWORDS .
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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6 SOURCE None
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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7 ORGANISM .
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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8 .
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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9 COMMENT Annotated with Bakta
6
92eee5f31117 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit fe9aabe924f278694d20b82169edacdb3e91eb49
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10 Software: v1.9.2
4
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11 Database: v5.0, full
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12 DOI: 10.1099/mgen.0.000685
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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13 URL: github.com/oschwengers/bakta
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14
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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15 ##Genome Annotation Summary:##
6
92eee5f31117 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit fe9aabe924f278694d20b82169edacdb3e91eb49
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16 Annotation Date :: 02/11/2024, 00:27:34
4
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17 CDSs :: 2
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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18 tRNAs :: 0
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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19 tmRNAs :: 0
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20 rRNAs :: 0
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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21 ncRNAs :: 0
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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22 regulatory ncRNAs :: 0
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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23 CRISPR Arrays :: 0
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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24 oriCs/oriVs :: 0
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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25 oriTs :: 0
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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26 gaps :: 0
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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27 pseudogenes :: 0
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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28 FEATURES Location/Qualifiers
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29 source 1..1330
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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30 /mol_type="genomic DNA"
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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31 /plasmid="unnamed1"
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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32 gene 413..736
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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33 /locus_tag="IHHALP_00005"
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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34 CDS 413..736
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35 /product="hypothetical protein"
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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36 /locus_tag="IHHALP_00005"
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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37 /protein_id="gnl|Bakta|IHHALP_00005"
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38 /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
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39 AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL
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40 MAD"
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41 /codon_start=1
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42 /transl_table=11
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43 /inference="ab initio prediction:Prodigal:2.6"
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44 gene complement(join(971..1330,1..141))
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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45 /locus_tag="IHHALP_00010"
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46 CDS complement(join(971..1330,1..141))
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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47 /product="hypothetical protein"
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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48 /locus_tag="IHHALP_00010"
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49 /protein_id="gnl|Bakta|IHHALP_00010"
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50 /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
iuc
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51 EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR
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52 YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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53 IPI"
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54 /codon_start=1
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55 /transl_table=11
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56 /inference="ab initio prediction:Prodigal:2.6"
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57 ORIGIN
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58 1 ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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59 61 gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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60 121 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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61 181 tgattatatc gcgcaccact tttcgaccgt cttaccgccg gtattctgcc gacggacatt
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62 241 tcagtcagac aacactgtca ctgccaaaaa acagcagtgc tttgttggta attcgaactt
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63 301 gcagacagga caggatgtgc aattgttata ccgcgcatac atgcacgcta ttacaattac
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64 361 cctggtcagg gcttcgcccc gacaccccat gtcagatacg gagccatgtt ttatgacaaa
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65 421 acgaagtgga agtaatacgc gcaggcgggc tatcagtcgc cctgttcgtc tgacggcaga
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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66 481 agaagaccag gaaatcagaa aaagggctgc tgaatgcggc aagaccgttt ctggtttttt
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67 541 acgggcggca gctctcggta agaaagttaa ctcactgact gatgaccggg tgctgaaaga
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68 601 agttatgcga ctgggggcgt tgcagaaaaa actctttatc gacggcaagc gtgtcgggga
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69 661 cagagagtat gcggaggtgc tgatcgctat tacggagtat caccgtgccc tgttatccag
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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70 721 gcttatggca gattagcttc ccggagagaa actgtcgaaa acagacggta tgaacgccgt
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71 781 aagcccccaa accgatcgcc attcactttc atgcatagct atgcagtgag ctgaaagcga
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72 841 tcctgacgca tttttccggt ttaccccggg gaaaacatct ctttttgcgg tgtctgcgtc
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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73 901 agaatcgcgt tcagcgcgtt ttggcggtgc gcgtaatgag acgttatggt aaatgtcttc
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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74 961 tggcttgata ttatattgga atgccttttt tcaaagcaaa tgatgtggct ttggatagaa
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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75 1021 ggtttacgtt gatcttatca aagttttttt taaagaacga agccgagagc tcagataaat
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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76 1081 cattatattc atcagttttc gtaactttgt ttaatgtgta acttgaaaac ttctcgccat
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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77 1141 taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa
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78 1201 aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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79 1261 tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg
3f0aa1b3e816 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit e2c4ab5546b135ff903545073c3223aab166d8f5
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80 1321 cttctatttg
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81 //