Mercurial > repos > iuc > bakta
comparison test-data/TEST_4/TEST_4.log @ 0:1a27ad3d0cdf draft
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/bakta commit 7d595b05b8d595f554b57dadbf1beb0b39733af3
| author | iuc |
|---|---|
| date | Thu, 01 Sep 2022 17:28:43 +0000 |
| parents | |
| children | da5f1924bb2e |
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| -1:000000000000 | 0:1a27ad3d0cdf |
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| 1 parse genome sequences... | |
| 2 imported: 1 | |
| 3 filtered & revised: 1 | |
| 4 plasmids: 1 | |
| 5 | |
| 6 start annotation... | |
| 7 predict tRNAs... | |
| 8 found: 0 | |
| 9 predict tmRNAs... | |
| 10 found: 0 | |
| 11 predict rRNAs... | |
| 12 found: 0 | |
| 13 predict ncRNAs... | |
| 14 found: 0 | |
| 15 predict ncRNA regions... | |
| 16 found: 0 | |
| 17 predict CRISPR arrays... | |
| 18 found: 0 | |
| 19 predict & annotate CDSs... | |
| 20 predicted: 2 | |
| 21 discarded spurious: 0 | |
| 22 revised translational exceptions: 0 | |
| 23 detected IPSs: 0 | |
| 24 found PSCs: 0 | |
| 25 found PSCCs: 0 | |
| 26 lookup annotations... | |
| 27 conduct expert systems... | |
| 28 amrfinder: 0 | |
| 29 protein sequences: 0 | |
| 30 user protein sequences: 0 | |
| 31 combine annotations and mark hypotheticals... | |
| 32 analyze hypothetical proteins: 2 | |
| 33 detected Pfam hits: 0 | |
| 34 calculated proteins statistics | |
| 35 revise special cases... | |
| 36 extract sORF... | |
| 37 potential: 16 | |
| 38 discarded due to overlaps: 2 | |
| 39 discarded spurious: 0 | |
| 40 detected IPSs: 0 | |
| 41 found PSCs: 0 | |
| 42 lookup annotations... | |
| 43 filter and combine annotations... | |
| 44 filtered sORFs: 0 | |
| 45 detect gaps... | |
| 46 found: 0 | |
| 47 detect oriCs/oriVs... | |
| 48 found: 0 | |
| 49 detect oriTs... | |
| 50 found: 0 | |
| 51 apply feature overlap filters... | |
| 52 select features and create locus tags... | |
| 53 selected: 2 | |
| 54 | |
| 55 genome statistics: | |
| 56 Genome size: 1,330 bp | |
| 57 Contigs/replicons: 1 | |
| 58 GC: 45.2 % | |
| 59 N50: 1,330 | |
| 60 N ratio: 0.0 % | |
| 61 coding density: 62.0 % | |
| 62 | |
| 63 annotation summary: | |
| 64 tRNAs: 0 | |
| 65 tmRNAs: 0 | |
| 66 rRNAs: 0 | |
| 67 ncRNAs: 0 | |
| 68 ncRNA regions: 0 | |
| 69 CRISPR arrays: 0 | |
| 70 CDSs: 2 | |
| 71 hypotheticals: 2 | |
| 72 signal peptides: 0 | |
| 73 sORFs: 0 | |
| 74 gaps: 0 | |
| 75 oriCs/oriVs: 0 | |
| 76 oriTs: 0 | |
| 77 | |
| 78 export annotation results to: /tmp/tmpb092rhfs/job_working_directory/000/12/working | |
| 79 human readable TSV... | |
| 80 GFF3... | |
| 81 INSDC GenBank & EMBL... | |
| 82 genome sequences... | |
| 83 feature nucleotide sequences... | |
| 84 translated CDS sequences... | |
| 85 hypothetical TSV... | |
| 86 translated hypothetical CDS sequences... | |
| 87 machine readable JSON... | |
| 88 genome and annotation summary... | |
| 89 | |
| 90 If you use these results please cite Bakta: https://doi.org/10.1099/mgen.0.000685 | |
| 91 Annotation successfully finished in 0:01 [mm:ss]. |